Results for "pairs"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ntenyView' shows conservation of large-scale gene order between species pairs. A brief summary of the calcu...ies. MicroSyn searches for conserved, flanking colinear homologous gene pairs between two genomic fragments...2613 days ago
Dynamic chromosome breakpoints !!!
...ensation and decondensation process. This is followed by nuclear envelope dissolution, mitotic spindle assembly, migration of the sister chromatid pairs to the metaphase plate, divis...3556 days ago
Structural variation: the hidden genomic treasure
...as chromosomal rearrangements larger than 1kb, but due to a higher resolution of new detection methods, smaller variants (between 50 and 1000 base pairs) can now be accurately assess...2706 days ago
- ...n addition to rearrangements, gene insertions, and losses. Ancestral relationships between markers are defined in term of Gapped Adjacencies, i.e. pairs of markers separated by up to...
2533 days ago
String graph based genome assembly software and tools !
...verlap graph, the use of (generalized) edge multiplicity statistics for more accurate estimation of read copy counts, and the improved use of mate pairs and min-cost flow for support...2332 days ago
BBTools for bioinformatician !
...alignment score is higher to one genome than another, it will be associated with that genome only (this considers the combined scores of read pairs - pairs are always kept together). Bu...2274 days ago
Basic command-line to run BLAST
...sults using less. Note that there can be more than one match between the query and the same subject. These are referred to as high-scoring segment pairs (HSPs). less cow_vs_huma...2247 days ago
- ...-iquote . -ISpines -fopenmp -c ./analysis/BreakTransByPairs.cc -o obj/analysis/BreakTransByPairs.o ./analysis/BreakTransByPai...-iquote . -ISpines -fopenmp -c ./analysis/JoinTransByPairs.cc -o obj/analysis/JoinTransB...
2136 days ago
List of motif discovery tools !
...n sequences Discover long patterns in protein sequences. MALISAM -- Manual ALIgnments for Structurally Analogous Motifs Database containing pairs of structural analogs and the...1996 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...equencing computer in a genome sequencing experiment. Depending on the sequencing system used, these "reads" range from 20 to 1000 nucleotide base pairs (bp) in length. Usually, leng...1207 days ago
