Results for "parallel"
Blogs
List of bioinformatics workflow management tools !
...2018 | web ] Nextflow (recommended) – A fluent DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipelines in a p...1135 days ago
- ... - *R Advanced R Topics Plots (PDF, R) Miscellaneous Plots Functions (PDF, R) Writing Functions in R Parallel (PDF, R) Parallel Execution Packaging (R) Pull...
3257 days ago
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Bookmarks
Public Databases for Bioinformatics !
...results can be reproduced /srv/www/$LABNAME/ web accessible from mitra.stanford.edu *NOT BACKED UP* Some parallel programming patterns: # gzip a bunch of files parallel gzip -- *.FILESTOGZIP # fo...1132 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-acce...3567 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...s (also known as quasi-species). Genomix 0.2.11 – Parallel Genome Assembly using HyracksGenomix is a parallel genome assembly system built...T-cell metagenomes using short reads from the massively parallel sequencing platforms. IDBA /...2678 days ago
Awesome perl frameworks, libraries and software - PART 2
...dnmfarrell/perltricks-static - PerlTricks.com is a website dedicated to Perl programming code and community news. dluxhu/perl-parallel-forkmanager - Parallel::ForkManager dams/riak-clien...2487 days ago
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Top-level pages
- ...thms are specified by supplying only the logic component. Serial or parallel Algorithms are usually dis...n of an algorithm at a time. This is a serial algorithm, as opposed to parallel algorithms, which take advant...
3939 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ssemblies of mammalian genomes from massively parallel sequence data. Gnerre et al,...ibes Trans-ABySS, a pipeline to use the ABySS parallel assembler for de novo transcr...enome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar,...3772 days ago
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Wire posts
News
- ...h to considerably speed GWAS computation time on a notebook book computer. More http://www.extension.org/pages/68354/upcoming-webinar:-fast-semi-parallel-linear-and-logistic-regressio...
3882 days ago
- ...sequencing has come a long way in aiding genetic disease diagnosis by bringing down both the time and cost of testing. Testing involves massively parallel sequencing of a single to 100...
2302 days ago
Opportunity posts
Walk-in-Interview @ Indian Agricultural Statistics Research Institute
...nce Expertise in Java programming. Knowledge of system administration and networking under Linux environment. Knowledge of parallel programming and cluster compu...3860 days ago
Bioinformatic/computational postdoc at South Dakota State University
...environment. • Perl, Python and Java programming experience • Data management and database development experience Desired Qualifications: • Parallel computing experience • Exper...3700 days ago
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ResearchLabs posts
- ...hnology 2012), and generally fall into one of six areas: 1) next-generation human genetics; 2) genome contiguity & completeness; 3) massively parallel functional analysis; 4) molec...
3854 days ago
- ...ithmic tools and molecular physics tools to study basic principles of cellular functioning starting from genomic data. We run several projects in parallel, all aiming at understanding...
3260 days ago
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Video
- ...m the point of view of the cancer-causing somatic cell population, this is evolution driven by mutation and selection. Genomics has resulted in a parallel consensus that the central fu...
3866 days ago
Bio-Scripts
Calculate ATGC percentage in parallel with perl
#!/usr/bin/perl use strict; use Parallel::ForkManager; use Bio::SeqIO; #usage: perl testParallel.pl my %sequences; my $seqio = Bio::SeqIO->ne...D's back to child specific information my $pm = new Parallel::ForkManager($max_procs);...2649 days ago
- ...ing './install-sh' configure.ac:8: installing './missing' Makefile.am: installing './INSTALL' Tests/AdHoc/Makefile.am: installing './depcomp' parallel-tests: installing './test-dri...
2144 days ago
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Comments
Comment on "Nanopolis: polish a genome assembly"
...draft.fa reads.fa | samtools sort -o reads.sorted.bam -T reads.tmp - samtools index reads.sorted.bam python nanopolish_makerange.py draft.fa | parallel --results nanopolish.results...2092 days ago
- ..._identity <value>, --pi <value> threshold for identity [default : 85] -t <value>, --threads <value> count of threads for parallel execution [default : 1] -o &...
2115 days ago
- +6 more Comments
