Install ImageMagick from Unix Source
...d link libraries... printf %s\nchecking for archiver @FILE support... @checking for strip... stripchecking for ranlib... ranlibchecking command to parse /usr/bin/nm -B output from gc...2145 days ago
Julia Programming Language, a Python and R rival
...come one of the most lucrative fields. In fact, data scientists are some of the most sought people. They are usually hired to analyze, control and parse large chunks of data. Impleme...2079 days ago
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Awesome perl frameworks, libraries and software - PART 2
...ion clbecker/perl-wiktionary-parser - Client and parser of documents pulled from the...nbsp;- An experimental Perl 5 parser/compiler written in Perl 5...r eboks.dk dagolden/extutils-parsexs - converts Perl XS cod...fukawi2/boxcutter - Perl parser for converting iTunes playli...2493 days ago
Awesome perl frameworks, libraries and software - PART 3
... - Simple API for XML including pure Perl parser GeneticGenesis/Perl-Ferment...o program in the OTRS way. masak/csv - A parser for CSV (comma-separated val...xPerl-Module-Examples not from the wxBook doy/parse-keyword - DEPRECATED: wr...2493 days ago
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link f...3919 days ago
Commercial and public next-gen-seq (NGS) software
...echfak.uni-bielefeld.de/swift/biolib.is library and a set of script targeted to NGS. There are modules to: clean sequences (sanger, 454, ilumina), parse caf, ace and bowtie map files...3518 days ago
3889 days ago
Perl Poem: Parse it in both Perl and English!
Larry's, er, corpus has fortunately been overshadowed by that of the reigning Perl Poet, Sharon Hopkins. She has written quite a few Perl poems, as well as a paper on...3917 days ago
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at...3896 days ago
2143 days ago
R script to visualize fastANI core-genome comparison
...ualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #Parse command line arguments query...1100 days ago
collinearity: scripts to parse and analyse MCScanX collinearity output
scripts to parse and analyse MCScanX collinearity outputTags: collinearity, scripts, parse, analyse, MCScanX, collinearity, output
2348 days ago
“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
One code to find them all is a set of perl scripts to extract useful information from RepeatMasker about transposable elements, retrieve their sequences and get some quantitative information. Assemble RepeatMasker hits into complete TE copies, including LTR-retrotransposon Retrieve correspond...Tags: perl, tool, conveniently, parse, RepeatMasker, output, files
2161 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
...e output files (eg. genome1 from genome1.fsa). Header lines in the FASTA files should not contain ':' or '-' to avoid parsing problems. View or parse MAF output The output of M...1284 days ago
Comment on "Most Commonly used Awk by Bioinformatician"
I love awk but recommend you to try bioawk . Bioawk is a modified version of awk which will parse some common sequence formats. https://github.com/lh3/bioawk3680 days ago