Install ImageMagick from Unix Source
...d link libraries... printf %s\nchecking for archiver @FILE support... @checking for strip... stripchecking for ranlib... ranlibchecking command to parse /usr/bin/nm -B output from gc...2139 days ago
Julia Programming Language, a Python and R rival
...come one of the most lucrative fields. In fact, data scientists are some of the most sought people. They are usually hired to analyze, control and parse large chunks of data. Impleme...2073 days ago
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Awesome perl frameworks, libraries and software - PART 2
...ion clbecker/perl-wiktionary-parser - Client and parser of documents pulled from the...nbsp;- An experimental Perl 5 parser/compiler written in Perl 5...r eboks.dk dagolden/extutils-parsexs - converts Perl XS cod...fukawi2/boxcutter - Perl parser for converting iTunes playli...2487 days ago
Awesome perl frameworks, libraries and software - PART 3
... - Simple API for XML including pure Perl parser GeneticGenesis/Perl-Ferment...o program in the OTRS way. masak/csv - A parser for CSV (comma-separated val...xPerl-Module-Examples not from the wxBook doy/parse-keyword - DEPRECATED: wr...2487 days ago
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link f...3913 days ago
Commercial and public next-gen-seq (NGS) software
...echfak.uni-bielefeld.de/swift/biolib.is library and a set of script targeted to NGS. There are modules to: clean sequences (sanger, 454, ilumina), parse caf, ace and bowtie map files...3512 days ago
3883 days ago
Perl Poem: Parse it in both Perl and English!
Larry's, er, corpus has fortunately been overshadowed by that of the reigning Perl Poet, Sharon Hopkins. She has written quite a few Perl poems, as well as a paper on...3912 days ago
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at...3890 days ago
2137 days ago
R script to visualize fastANI core-genome comparison
...ualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #Parse command line arguments query...1095 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
...e output files (eg. genome1 from genome1.fsa). Header lines in the FASTA files should not contain ':' or '-' to avoid parsing problems. View or parse MAF output The output of M...1279 days ago
Comment on "Most Commonly used Awk by Bioinformatician"
I love awk but recommend you to try bioawk . Bioawk is a modified version of awk which will parse some common sequence formats. https://github.com/lh3/bioawk3675 days ago