Results for "parse"
Blogs
Install ImageMagick from Unix Source
...d link libraries... printf %s\nchecking for archiver @FILE support... @checking for strip... stripchecking for ranlib... ranlibchecking command to parse /usr/bin/nm -B output from gc...2138 days ago
Julia Programming Language, a Python and R rival
...come one of the most lucrative fields. In fact, data scientists are some of the most sought people. They are usually hired to analyze, control and parse large chunks of data. Impleme...2072 days ago
Bookmarks
- Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.
1085 days ago
- ...ON (JavaScript Object Notation) is a lightweight data-interchange format. It is easy for humans to read and write. It is easy for machines to parse and generate. It is based on...
2580 days ago
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Pages
Awesome perl frameworks, libraries and software - PART 2
...ion clbecker/perl-wiktionary-parser - Client and parser of documents pulled from the...nbsp;- An experimental Perl 5 parser/compiler written in Perl 5...r eboks.dk dagolden/extutils-parsexs - converts Perl XS cod...fukawi2/boxcutter - Perl parser for converting iTunes playli...2486 days ago
Awesome perl frameworks, libraries and software - PART 3
... - Simple API for XML including pure Perl parser GeneticGenesis/Perl-Ferment...o program in the OTRS way. masak/csv - A parser for CSV (comma-separated val...xPerl-Module-Examples not from the wxBook doy/parse-keyword - DEPRECATED: wr...2486 days ago
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Top-level pages
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link f...3912 days ago
Commercial and public next-gen-seq (NGS) software
...echfak.uni-bielefeld.de/swift/biolib.is library and a set of script targeted to NGS. There are modules to: clean sequences (sanger, 454, ilumina), parse caf, ace and bowtie map files...3511 days ago
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Wire posts
News
- ...quiring BLAST-based analysis produce huge amounts of data to be parsed. There are several BLAST parsers are available, but they are...Carcangiu develope a new and fast fast package "BlaSTorage" to parse and store BLAST results. BlaS...
3882 days ago
Fun
Perl Poem: Parse it in both Perl and English!
Larry's, er, corpus has fortunately been overshadowed by that of the reigning Perl Poet, Sharon Hopkins. She has written quite a few Perl poems, as well as a paper on...3911 days ago
Video
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at...3889 days ago
Bio-Scripts
- ...e use here at MSKCC: curl -sL https://cpanmin.us | $PERL_BASE/perl-5.24.1/bin/perl - --notest -l $PERL_BASE/perl-5.24.1 App::cpanminus JSON::Parse XML::Parser XML::Simple LWP LWP::Simple...
2136 days ago
R script to visualize fastANI core-genome comparison
...ualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #Parse command line arguments query...1093 days ago
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Comments
Comment on "Mugsy: multiple whole genome alignment tool"
...e output files (eg. genome1 from genome1.fsa). Header lines in the FASTA files should not contain ':' or '-' to avoid parsing problems. View or parse MAF output The output of M...1278 days ago
Comment on "Most Commonly used Awk by Bioinformatician"
I love awk but recommend you to try bioawk . Bioawk is a modified version of awk which will parse some common sequence formats. https://github.com/lh3/bioawk3673 days ago
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