Comment on "Tools for Sequence translation !"
...o amino acid sequences. It supports several genetic codes and can also perform reverse translation (i.e., co...o protein sequences. SeqKit: This is a command-line tool that can perform several sequence manipulation...435 days ago
Comment on "Basic command-line to run BLAST"
...uery sequence. Here are the general steps for performing a BLAST search: Choos...Choose the database: BLAST searches can be performed against many different data...d, the word size, and the gap penalties. Perform the search: Once the query se...437 days ago
Comment on "Running Trinity on RNA-seq !"
...a, such as outliers or batch effects, you'll want to catch them as early as possible and account for them in your further data explorations. Perform differential expression analy...2137 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...the reference. (Currently no other options are provided. This is a placeholder for future features, such as cDNA mapping) [normal] --overlapper - Perform overlapping instead of mappin...2306 days ago
Comment on "Worldwide funding agencies to fund your bioinformatics research !!"
...rturo Falaschi ICGEB Fellowships programme offers long and short-term fellowships for scientists who are nationals of ICGEB Member States to perform research in Trieste,&nbs...2749 days ago
Comment on "List of popular bioinformatics software/tools"
There are different ways to perform exome sequence analysis, but GATK have a good guide for 'Best Practice': http://www.broadinstitute.org/gatk/guide/best-practices3602 days ago
Comment on "Most Commonly used Awk by Bioinformatician"
This MIT wiki page demonstration shows how to perform some basic bioinformatics tasks using simple UNIX commands. http://rous.mit.edu/index.php/Unix_commands_applied_to_bioinformatics3922 days ago