Results for "plots"
Blogs
...g (R) PMML (R) Exporting Models for Deployment Advanced Topics Text Mining: *OnePageR - *R Advanced R Topics Plots (PDF, R) Miscellaneous Plots Functions (PDF, R)...3257 days ago
BBTools for bioinformatician !
...ther lines are generally safe to ignore but they track other things, like read1- or read2-specific data, and random kmers versus the first kmer.It plots a point every X reads (config...2263 days ago
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Bookmarks
- Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools
3001 days ago
Ensembl comparative genomics resources
...esentation across all supported species. Specialized web-based visualizations are also available including synteny displays, collapsible gene tree plots, a gene family locator and di...2981 days ago
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Files
R Graphical Cookbook by Winston Chang
...code chunks shown in the text of the book, but in most cases the differences will be that these pages contain additional code to lay out multiple plots on a single "page". The code...2147 days ago
Top-level pages
Next generation sequencing in R or bioconductor environment
...tension for genomics data (online manual) Gviz: Plotting data and annotation information along genomic coordinates HilbertVis: Hilbert genome plots GenomeGraphs: Plotting genom...3617 days ago
Apps for Busy Bioinformatics Researchers !!!
...amine the status of genes in common cell lines. A subset of COSMIC containing cell lines can be queried for mutations. Copy Number Variation (CNV) plots from cell lines profiled by G...3534 days ago
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Wire posts
News
R package for visualising GO enrichment
...the GO enrichment results as word clouds and arranges them together with figures of experimental data. This allows us to draw informative summary plots for analyses such as differen...3933 days ago
IPython: Interactive notebooks
The IPython Notebook is a web-based interactive computational environment where you can combine code execution, text, mathematics, plots and rich media into a single document. These...3460 days ago
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Bio-Scripts
- # Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe19
2257 days ago
Estimate Genome Size with Jellyfish and R
jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? /common/Tutorial/Genome_estimation/sample_read_1.fastq /common/Tutorial/Genome_estimation/sample_rea...2239 days ago
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Tags
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in quality control of de novo genome assembly or identification of structural variation in a genome ...Tags: Bioinformatics, Hagfish, Assess, Assembly, Coverage, Plots, NGS, Structure, Variation, SV, Assembly, Genome
2899 days ago
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Comments
Comment on "Sibelia: A comparative genomics tool"
...inimum block size". Blocks located on the positive strand are colored green, while blocks from negative strand are red. By default, "Sibelia" plots only blocks obtained after th...1278 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Synteny based tool to arrange contigs "r2cat: synteny plots and comparative assembly" http://bibiserv.techfak.uni-bielefeld.de/r2cat https://academic.oup.com/bioinformatics/article/26/4/570/2433691418 days ago
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