2097 days ago
STELLAR: fast and exact local alignments
STELLAR is very practical and fast on very long sequences which makes it a suitable new tool for finding local alignments between genomic sequences under the edit distance model. Binaries are freely available for Linux, Windows, and Mac OS X at http://www.seqan.de/projects/stellar.2075 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
...tation, epistasis). MimicrEE2 runs on any computer with Java installed. It is distributed under the GPLv3 license at https://sourceforge.net/projects/mimicree2/.2045 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
...sp;exon-capture, and targeted capture data, it has been run on very large datasets as part of the Thousand Genomes and WGS500 projects, and is being used in clinica...2018 days ago
AMStat: display statistics of large sequence files from next generation sequencing projects
SAMStat is an efficient C program to quickly display statistics of large sequence files from next generation sequencing projects. When applied to SAM/BAM files all statistics...2003 days ago
SIMBA: a Genome Assembly Project Management System
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacter...1983 days ago
1971 days ago
FGENESH - Program for predicting multiple genes in genomic DNA sequences
...(50-100 times faster than GenScan) and most accurate gene finder available - see the figure and the table below. In recent rice genome sequencing projects, it was cited "the most succe...1962 days ago
Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale genome assemblies (up to mammalian-size). QUAST-LG is included in the QUAST p...1961 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
...therefore a valuable tool for the investigation of CNVs in largescale projects, as well as in clinical resea...gnostics. EXCAVATOR is freely available at http://sourceforge.net/projects/excavatortool/.EXCAVATOR is a...1947 days ago