Results for "pyrosequencing data"
Blogs
This is an extract of taxdump-readme.txt to be found...id -- node id in GenBank taxonomy database parent tax_id -- parent node id in GenBank taxonomy database rank -- rank of th...fields: division id -- taxonomy database division id division cd...1548 days ago
New Machine Learning Packages in R
Machine Learning autokeras v1.0.1: Implements an interface to AutoKeras, an open...ng models and classifiers based on sparse matrix objects representing textual data. It includes implementations...1500 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinformatics...Drug-Target Network: network data of 890 drugs and 394 target h...Thomson Investigational drugs database including information on...kr/~parkkw/Lnet/ TDR Targets Database: identification and rank...1434 days ago
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of code be executed instea...t > textwithoutuppercase.txt; Print only the second column of the data when using tabular as a separ...1381 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD...tools, pipelines and workflows, compute resources, data analysis reports, and case st...des a variety of services such as oligo synthesis, database construction, genome rese...1259 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and...ation from raw, short-read sequencing data to genotype a wide spectrum o...cripts that can assess the quality of data and the preprocessing pipelin...nd other low-complexity gene amplicon data; performs allele calling whil...992 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly me...ad to treatments for infectious diseases. Raw NGS dataReads can be saved as a Fasta...ve and what the standard is like. If required, raw data cleanup/quality trimming. Cho...1204 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns...9 (2009). Trimmomatic: Trimmomatic: A flexible trimmer for Illumina Sequence Data. Bolger, A. M., Lohse, M. &am...1047 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake “formula” file Note: The default...934 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Re...imer sequence removal (iVar; amplicon data only) Duplicate read marking...s and consensus; default for amplicon data || BCFTools, BEDTools; defaul...Primer trimming (Cutadapt; amplicon data only) Choice of multiple ass...877 days ago
