2524 days ago
List of comparative genomics resources !
...abase of coexpressed gene networks in mammals Find coexpressed gene lists and networks in human and mouse. CVTree -- A Phylogenetic Tree Reconstruction Tool Based on Whole Genomes...671 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity among genomic segments at the genome-wide scale. InfoGenomeR inte...1090 days ago
RNA-Seq De novo Assembly Using Trinity
...inity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-se...2959 days ago
Bio++ : C Language libraries for your biological need
...hood (NNI, including a PhyML-like algorithm).Mixed distance/ML tree reconstruction (iterative approaches).Tree c...ols Parameter estimation under maximum likelihood.Ancestral states reconstructions: Marginal likelihood.(Weight...3941 days ago
Bioinformatics in Africa: Part7 - Tunisia
...sduction pathways and statistical analysis of human sequence variation data (haplotype reconstruction and linkage di...1177 days ago
Genome Assembly Tools and Software - PART1 !!
...nomic sequences. Trinity 2.1.1 – RNA-Seq De novo Assembly Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-Se...2679 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...marcais/Quorum Trowel Software (C++) https://sourceforge.net/projects/trowel-ec/ Metagenomics Assembly-free phylogenomics AAF Phylogeny reconstruction directly from unassembled raw...2365 days ago
1593 days ago
Ph.D. student in Computational Systems Biology
...usually interdisciplinary environment. The Computational Biology Group seeks a highly-skilled Ph.D. student to work on an exciting project on reconstruction and analysis of an integrated...3792 days ago
2978 days ago
1970 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...blocks between (complex) genomes harboring different levels of synteny conservation. Despite a very simple algorithm, the reconstruction is highly congruent with reconstructions obtained with more sophistic...1588 days ago
Comment on "MGRA: Breakpoint graphs and ancestral genome reconstructions"
EAGER: efficient ancient genome reconstruction https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0918-z2470 days ago