Results for "repeat content"
Blogs
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of data and try to make...an’t be validated. Moreover, there is very less chances that anyone will repeat...3702 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a...el-Insights-into-Chromosome-Evolution-in-Birds , http://science.sciencemag.org/content/346/6215/1311). But the puzz...2604 days ago
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Bookmarks
Best practices in bioinformatics training for life scientists
Among life scientists, from clinicians to environmental researchers, a common theme i...nd practical concepts. Find the detail paper at http://bib.oxfordjournals.org/content/early/2013/06/25/bib.bbt043.f...3912 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell Universit...neration sequencing http://hmg.oxfordjournals.org/content/19/R2/R227.full.pdf ========...data http://bioinformatics.oxfordjournals.org/cgi/content/abstract/28/2/284?etoc RseqF...3481 days ago
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Files
- DOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3....00i4 5000 15000i0 -200 300i5 15000 40000i1 300 1000Repeat detection.../home/urbe/Tools/...ymv FALCON-Unzip-Scaff.bam FALCON-Unzip-Scaff-with-repeat....
2145 days ago
Discussion topics
- The key to finding a solution is to notice that most genomicsequences differ by...bt/journal/v30/n7/full/nbt.2241.html http://bioinformatics.oxfordjournals.org/content/29/13/i283.full http://group...
3914 days ago
Want to Know which genome assembler rule the world ?
Assemblathon 2: evaluating de novo methods of genome assembly http://www.gigasciencejournal.com/content/2/1/10/abstract http://blogs...3914 days ago
Pages
- I found several useful bioinformatics articles which exaplain, define and elaborate the bioinformatics in scientific way. Therefore, instead of writting it again I...
3915 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence read...Sequence AssemblerRePS (Repeat-masked Phrap with scaffolding...licitly identifies exact kmer repeats from the shotgun data and re...sembly reduces the numbers of repeats in the assembly, allows more...2680 days ago
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Top-level pages
- "Bioinformatics is a science of biological predictions an...need to be accessed in a meaningful way, and often contents of several databanks or data...structure can already be predicted from amino acid content. Secondary structure can be d...
3941 days ago
Phylogenetic for Bioinformatics
Biologists estimate that there are about 5 to 100 million...a phylogenetic tree: http://www.hiv.lanl.gov/content/sequence/TUTORIALS/TREE_TUTOR...torial.htmlPhylogenetic Trees: http://cnx.org/content/m11052/latest/Phylogeny by Ro...3940 days ago
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Wire posts
News
- The ongoing genomic research in USA contributed $31 billion to the U.S. gross national product and helped support 152,000 jobs. Reference: http://www.unitedformedicalresearch.com/wp-content/uploads/2013/06/The-Impact-of-Genomics-on-the-US-Economy.pdf
3946 days ago
2.4 Mb Genome Size for World's Biggest Virus
The genome size of new discovered Pandoraviruses have roughly twice the size of the r...t it may come from a different origin. For detail : http://www.sciencemag.org/content/341/6143/281 http://www.npr....3917 days ago
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Opportunity posts
PostDocs positions in computer science in HELSINKI, FINLAND
Several university departments in the Helsinki region, Finland, are looking for postd...ata Communications Software group) Intelligent multimodal information access (Content-Based Image and Information R...3888 days ago
NIT Calicut Faculty Jobs 2013 in Bioinformatics
NATIONAL INSTITUTE OF TECHNOLOGY CALICUT, KERALA NOTIFICATION FOR FACULTY RECRUITM...ture recommended by MHRD. More Info : http://www.nitc.ac.in/index.php/?url=content/submenu/2345/53840 days ago
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Video
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all human DNA se...ganisms, to see where it's the same and where it's different. In that way, the content of the genome is decoded bit...3911 days ago
- The gut mucosa hosts the body's largest population of immune cells. Nature Im...re.com/ni/index.html Nature has full responsibility for all editorial content, including NatureVideo content. This content is editorially...
3696 days ago
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Bio-Scripts
Count GC Content in nucleotide sequence with Perl
#!/usr/bin/perl -w ### Usage: get_gc_content.pl...----------------------- print OUT "ID\t% GCContent\tTotal Count\tG Count\tC Coun...; close(OUT); sub usage { $0 get_gc_content.pl } sub process_it...2899 days ago
Fill up the form and blast with perl
use WWW::Mechanize; use strict; use warnings; my $mech = WWW::Mechanize->new; m...etSet' => 'ATH1_pep', 'QueryText' => $sequence, }, ); print $mech->content;2319 days ago
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Groups
Single molecule Sequencing (SMS)
SMS is now slowly gaining place in sequencing world, more and more scientists now kee...for instance, http://www.genomebiology.com/2013/14/7/405 http://biorxiv.org/content/early/2015/06/29/021634...3221 days ago
Tags
- Summary: GenomeScope is an open-source web tool to rapidly estimate the overall characteristics of a genome, including genome size, heterozygosity rate, and repeat content from unprocessed short reads. These features are essential for studying genome evolution, and help to choose para...
Tags: Bioinformatics, Analysis, NGS, GenomeScope, Genome, Stats, Estimate, Heterozygosity, repeat content, Statistical
2340 days ago
