2198 days ago
Tools to detect synteny blocks regions among multiple genomes
...s. SyntenyView ( http://www.cbs.dtu.dk/dtucourse/cookbooks/nikob/exercises/gf1_output_5.html), Ensembl 'SyntenyView' shows conservation of large-scale gene order between species pa...2610 days ago
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Bioinformatics software for biologists in the genomics era
...gator empowerment need to take precedence over the current supposition that biologists should re-tool and become programmers when analyzing genome scale datasets.3787 days ago
3921 days ago
Genome Assembly Tools and Software - PART2 !!
...h; Genome Assembly with Contact Probability MapsLACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. KGB...2686 days ago
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National Workshop on Data Deluge in Biology: Use of High-Performance Grid & Cloud computing
...this area. Targeted participants are scientists, researchers including Ph.D students and faculty working in biology, genomics, biomedicine, large scale computing and related discipl...3800 days ago
3949 days ago
Bioinformatics PhD studentship available in New Zealand
...ry mechanisms of genes and non-coding RNAs, and their influences on different phenotypes and disease states of a cell. Recent shifts towards large-scale analyses of transcriptional r...3948 days ago
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Bioinformatics -- Understanding of living systems through information science
...ons that cause cancer, and the genome of the natto production strain Bacillus subtilis. Until now, genome analysis could only be done in national-scale projects. But now, next-gener...3917 days ago
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R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org...1102 days ago
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman...2906 days ago
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Comment on "A quick guide to Phred scaling"
...e of 10 corresponds to a base call accuracy of 90%, while a Phred score of 20 corresponds to a base call accuracy of 99%. Logarithmic scale: The Phred scale is logarithmic, which means t...416 days ago
Comment on "Sibelia: A comparative genomics tool"
...he best choice, but if you do not want to lose information about small-scale rearrangements, use "fine"....uces longer blocks and better coverage, while "fine" can capture small-scale rearrangements, for example,...1285 days ago