Results for "sequences"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...visualize and interrogate comparisons among multiple complete genome sequences. http://syntenyminer.sourcefo...nalyze synteny, homologous genes and other conserved elements between sequences. This software is useful in s...2610 days ago
Computer simulation of genetic mechanism !!
...program to simulate the evolution of protein sequences under the constraints of the...to simulate the evolution of recombinant DNA sequences in continuous time http://sci...program that simulates highly divergent DNA sequences and protein superfamilies htt...2975 days ago
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Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3945 days ago
- ...covering the common algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, predicting genes, finding re...
3945 days ago
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Files
Master Thesis: Trans-membrane topology prediction through Markov based decoders
...f the TM domains. Results: In a cross validated test on single sequences, our trans-membrane MM, correctly predicts the entire topology for 77% of the sequences in a standard dataset of 86 p...3945 days ago
- Alien spy are looking for human genome sequences ..
3840 days ago
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Discussion topics
- ...solution is to notice that most genomicsequences differ by very little. It may well be that the number of complete genome sequences being stored is increasing ra...isn't particularly compressible but a set of sequences shares so much in common that...
3920 days ago
Pages
Bio++ : C Language libraries for your biological need
...(sequence only).Sequence manipulation: truncation, concatenation, sub-sequences, etc.In silico molecular biol...tance (Miyata and Grantham) + import from any AAIndex entry.Consensus sequences.Pairwise alignment.Similarity...3948 days ago
Introduction to Bioinformatics
...net Resources Computational Molecular Biology Course Course on Bioinformatics EMBNet Biocomputing Tutorials Finding the genes in the genomic sequences The Genetic Programming Tuto...3921 days ago
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Top-level pages
- ...ugh to handle all sort of biological needs, which compel us to learn new biologically suitable language to handle ever growing genome or protein sequences. The next step after reading...
3948 days ago
- ...ermination of DNA and protein sequences, investigation of protein fun...ing nucleotide and amino acid sequences, protein domains, and protein...or example, DNA or amino acid sequences and three–dimensional s...f sequencing projects are DNA sequences. These become only really val...
3947 days ago
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Wire posts
News
100K Foodborne Pathogen Genome Project
...tion’s Center for Food Safety and Applied Nutrition, and Agilent Technologies, today announced that it has added 20 newly completed genome sequences of foodborne disease-causing...3923 days ago
Webinar: Wednesday 21 August 2013 at Noon EDT
This webinar will describe the use of combinatorial pooling to reconstruct gene sequences within BACs. Recent work in barley has shown that this level of sequence knowledge is sufficie...3920 days ago
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Opportunity posts
Livestock Functional Genomics Summer School (LFG 2013)
...pant should understand the basis and the context of livestock big molecular data, and be able to manipulate high density genotypes, whole genome sequences and transcriptome data. Th...3929 days ago
Postdoc Position in Computational Biology
...RNA-DNA interactions. Applicants should hold a M.Sc . or PhD in Computer Science or related areas. Experience in the analysis of biological sequences, gene expression and gene re...3705 days ago
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ResearchLabs posts
- ...apes, detection of RNA sequence/structure motifs, prediction and evaluation of alternative splice forms, description and detection of regulatory sequences. Link @ http://www.bioinf....
3940 days ago
- Computer Aided Protein Structure Prediction; Identification of Vaccine Candidates (T-Epitope prediction); Analysis of Nucleotide/Protein Sequences; Development of Web Server/ Softw...
3885 days ago
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Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3908 days ago
Bioinformatics -- Understanding of living systems through information science
...progress of the Human Genome Project, aiming to decode all human DNA sequences, has highlighted a research f...mparison system developed by the Sakakibara Lab calculates homologous sequences called anchors, which are con...3917 days ago
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Bio-Scripts
Python script to download covid genome !
.../usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ ha...ests.get("https://www.ncbi.nlm.nih.gov/core/assets/genbank/files/ncov-sequences.yaml").text) seqs = seqs['ge...1136 days ago
Download genome using NCBI esearch command line !
...NI for alignment free comparision #conda install -c bioconda fastani fastANI -q seq1.fa -r seq2.fa --visualize -o fastani.out #Plot using sequences Rscript plotSeq.R seq1.fa se...1101 days ago
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Groups
...for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal o...3903 days ago
...cover some of the common algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, predicting genes, finding re...3902 days ago
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Tags
GenBank release 257.0 is now available!
GenBank release 257.0 is now available! This release has 25.10 trillion bases and 3.69 billion records. Learn more: https://ncbiinsights.ncbi.nlm.nih.gov/2023/08/21/genbank-release-257/ GenBank release 257.0 (8/15/2023) is now available on the NCBI FTP site. This release has 25.10...Tags: GenBank, Release, Dataset, Records, Sequences
256 days ago
Curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism
MCBI have a curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism sources and current names. This set is critical for correctly identifying and classifying prokaryotic (bacteria and archaea) and fungal samples. To provide easy access to these sequences, ...Tags: Curated, ribosomal, RNA, rRNA, reference, sequences, targeted, loci, verifiable, organism, 16S, 18S, 28S, ribosomal, RNA
1533 days ago
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Comments
Comment on "Tools for Sequence translation !"
...everal genetic codes and can handle multiple sequences at once. EMBOSS Transeq:...mand-line tool that can translate nucleotide sequences into amino acid sequences. It...everal genetic codes and can handle multiple sequences at once. CLC Sequence Vi...421 days ago
Comment on "Tools for RNA classification"
...seful for identifying non-coding RNA (ncRNA) sequences. Rfam: Rfam is a databas...ctor machine (SVM) algorithm to classify RNA sequences. It is particularly useful fo...ieve the best possible classification of RNA sequences....421 days ago
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