Results for "sequences"
Blogs
New Machine Learning Packages in R
...get started. SeqDetect v1.0.7: Implements the automaton model found in Krleža, Vrdoljak & Brčić (2019) to detect and process sequences. See the vignette f...1494 days ago
Bioinformatics tools for telomere to telomere assembly !
...s from genomic samples to cluster and generate high-quality consensus sequences from HiFi reads (Zev Kronenbe...performs allele calling while detecting polymorphic sites within the sequences and removing potential chimer...986 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...the de novo assembly method for small to medium-sized genomes. What is de novo genome assembly?The method of taking a large number of short DNA sequences and placing them back togethe...1198 days ago
Frequently used bioinformatics tools for viral genome analysis !
...stouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. Adapter sequences: Optimal enzymes for amplifyi...1041 days ago
Useful Bioinformatics Analysis Tools !
...S., Grabowski, Sz., Compression of DNA sequences in FASTQ format, Bioinfo...ns (even containing hundreds of thousands of sequences). • Deorowic...queries for a collection of multiple genome sequences. • Danek, A....857 days ago
List of comparative genomics resources !
...bEST (database of expressed gene sequences) libraries and removes contam...DoTS -- Database Of Transcribed Sequences Search for Indices of gene a...nary analysis of DNA and protein sequences. MamPol -- a database of...uster (ESTs and full-length mRNA sequences organized into clusters that...671 days ago
Bioinformatics tools to explore SSRs in genomes !
...ellite) is a web-based tool that can identify SSRs in DNA sequences. It can be used to analyze nucleotide sequences from various organisms and ca...SciRoKo is a software tool that can identify SSRs in DNA sequences. It can be used to analyze ge...419 days ago
Common methods to discover tandem repeats
...Tandem repeats are DNA sequences that are repeated in a contig...uous manner in the genome. These sequences are often used as genetic mar...identifies tandem repeats in DNA sequences. It is available for free dow...n identify tandem repeats in DNA sequences. It works by comparing the in...417 days ago
Steps to find palindrome in genomes !
...Palindromes are sequences of nucleotides that read the...equence directly for palindromic sequences using pattern matching tools,...d HindIII, recognize palindromic sequences and cleave DNA at these sites...ll, the discovery of palindromic sequences in genomes can be accomplishe...417 days ago
- ...abases related to genetic information, including 16S rRNA sequences. You can access the 16S ribosomal RNA sequences from NCBI's Nucleotide databa...s another comprehensive database for ribosomal RNA (rRNA) sequences. It covers not only 16S rRNA...
5 days ago
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