Results for "short-read"
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Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructi...mbler) is a popular software tool for short-read assembly. Here are the general steps for short-read assembly using SPAdes: Q...These are the general steps for short-read assembly using SPAdes. Howeve...429 days ago
- There are several tools available for short read simulators that are widely used in bioinformatics research. Here are some of them: ART: The ART...
429 days ago
Comment on "Short-read assembly using Spades !"
...SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble rea...quencing platforms. Here is a brief overview of how to use SPAdes for short-read assembly: Install SPAdes...435 days ago
Comment on "Letter of motivation for bioinformatics applicants !"
Any Motivation Letter should consist of a short intro defining the program you would like to get. First, state a clear objective of your future task and the re...1234 days ago
Comment on "Sibelia: A comparative genomics tool"
Basic usage =========== In this manual it is assumed that "Sibelia" is properly installed and the directory with "Sibelia.py" is in your "PATH" environment variable or...1299 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Biology Direct journals accept short notes/ application notes https://biologydirect.biomedcentral.com/submission-guidelines/aims-and-scope1356 days ago
Comment on "AutoDock Vina: an open-source program for doing molecular docking."
AutoDockFR (or ADFR in short) is a protein-ligand docking program developed in the Sanner laboratory at Scripps Research under the AutoDock umbrella. https://ccsb.scripps.edu/adfr/1436 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
Benchmark (or "High-confidence") variant calls and regions:We developed an integration pipeline to utilize sequencing data generated by multiple technologies to generate...1574 days ago
Comment on "List of Bioinformatics and Computational Biology Journals"
You can also bioinformatics tools at https://www.journals.elsevier.com/information-and-software-technology/short-communications/information-and-software-technology-now-publishing-short-com2088 days ago
Comment on "HALC: High throughput algorithm for long read error correction"
Inputs Long reads in FASTA format. Contigs assembled from the corresponding short reads in FASTA format. The initial short reads in FASTA format (only fo...2106 days ago
