Results for "study the various software (Bioinformatics)"
Bio-Scripts
# To follow these instructions, we'll assume your system admins have already installed these essentials: # Debian/Ubuntu s...erever you want to maintain such softwar...-standard location is baked into the perl binary: cd perl-5.24.1 ./Co...r Ensembl API, VEP, OncoKB, and other tools we us...2155 days ago
- # list sample names & download URLs. sample_links = {"ERR458493": "h...ttps://osf.io/qfsze/download"} # the sample names are dictionary keys in sample_links. extract them to...a-seq data from Schurch et al, 2016 study r...ate the download link directly from the dictionary...
1527 days ago
Installing ggplot2 and its dependencies on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter/minidot/bin$ sudo...Lean On" Copyright (C) 2018 The R Foundation for Statistical...unspecified) also installing the dependencies ‘ellipsis’, ‘glu.... gcc -std=gnu99 checking whether th...her the C++ compiler supports the long long type... yes checking wh...1561 days ago
Installing docker for Bioinformatics on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ sudo apt-get remove docker docker-engine...ou should now consider adding your user to the "do...o take effect! WARNING: Adding a user to the "doc...system as a tar archive history Show the history of a...1524 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP...untu0.1) ... #you can find the test script web.pl at https:/...gsBookmarksFilesFunGroupsPollsThe Wir...Evaluation of genome assembly software based on long readsBy BioStar...Evaluationgenomeassemblysoftwarelongreads TGS technolo...1522 days ago
Commands to install conda in Ubuntu !
...19.03 In order to continue the installation process, please review the license agreement. Please,...o contains Visual Studio Code software binaries from Mi crosoft Cor...SHA256 and RIPEMD160), a nd various encryption algorithms (AES, DE...lation finished. Do you wish the installer to...1522 days ago
Set up WGD environment using conda !
...cause it #depends on a lot of software. wgd depends on the following software #BLAST #MCL #MUSCLE/MAFF...FastTree #i-ADHoRe #Creat the conda ENV and install its deps #F...AND [ARGS]... Welcome to the wgd command line interface!...NO WARRANTY; This is free software, and yo...1215 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
#Need to download i-adhore-3.0.01.tar.gz from https://wdiceryf...-adhore/licensing/ #Follow these steps (wgd) ➜ i-adhore-...sion of CMake. Update the VERSION argument value or us...: note: directive argument in the rang...: note: directive argument in the range [0, 15...1215 days ago
Bash script to check installed bioinformatics program !
allTools=(bwa mummer trimomatic) decFlag=0; for name in ${allToo...-s $name &> /dev/null if [ $? -ne 0 ] then...stalled" fi done if [[ $decFlag -ne 0 ]] then ec...1057 days ago
Download desire version of Blast software !
#Create a directory and wget it wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.6.0/ncbi-blast-2.6.0+-x64-linux.tar.gz #unpacking blast tar -zxvf ncbi-blast-...953 days ago
