Results for "tab-deilimited"
Blogs
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a collection of contiguous genes located on the same chromosome. These block regions have...2620 days ago
How to install Perl modules on Mac OS X in easy steps !!
Today at work, I learned how to install Perl modules using CPAN. It’s a lot easier than I thought. You see, for the past couple of years, I’ve been a bit...2764 days ago
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Bookmarks
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from R...
2902 days ago
- Before uploading a data file, check the samples gallery to make sure that your data format is compatible. Your file must be plain text. Your data values...
2812 days ago
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Top-level pages
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CASTp : http://sts.bioengr.uic.edu/castp/ Computed Atlas of Surface Topography of prote...3753 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizations, Biological Int...2918 days ago
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Wire posts
News
Custom R charts coming to Excel !
This week at the BUILD conference, Microsoft announced that Power BI custom visuals will soon be available as charts with Excel. You'll be able to choose a range...2195 days ago
Bio-Scripts
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be freely distributed under GNU General Public License. # This script will parse a NCBI blastx output file and out...2924 days ago
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }2535 days ago
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Tags
Convert VCF to tab-deilimited table
Performed with GATK : java -Xmx8g -jar GenomeAnalysisTK.jar \ -T VariantsToTable \ -R reference.fa \ -V reference_genomes_GT.vcf \ -F CHROM -F POS -F REF -F ALT -GF GT \ -o reference_genomes_GT.table multiple_sample.vcf should also be converted to multiple_sample_GT.table using this...Tags: Convert, VCF, tab-deilimited, table
2192 days ago
Comments
Comment on "Basic command-line to run BLAST"
Thanks for this blog ... here is some reference for BOL users urbe@urbo214b[Human_vs_Avaga_protein] wget ftp://ftp.ncbi.nlm.nih.gov/genomes/Homo_sapiens/protein/protein.fa...2254 days ago
- RStudio v0.99.292 Preview — Release Notes A preview release of RStudio v0.99.292 is now available for testing and feedback. Highlights include: Data viewer with s...
3367 days ago
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