1562 days ago
25 days ago
2895 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have been relatively slow and c...2882 days ago
Genome Assembly Tools and Software - PART2 !!
...ds fully automated metagenomic analysis, starting with next-generation sequencing reads and producing genomic scaffolds, open-reading frames and taxonomic or functional annotations. T...2699 days ago
Awesome perl frameworks, libraries and software - PART 4
...ins kristofg/rifec - Receive Images From Eye-Fi Cards kirei/fpdns - Net::DNS::Fingerprint gjospin/PhyloSift - Phylogenetic and taxonomic analysis for genomes and meta...2508 days ago
Phylogenetic for Bioinformatics
...t another source of information becoming available for systematic and taxonomic appraisal. This particular kind of data has become so popular that taxonomical schemes based solely on mol...3960 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...kov chain models (using k-words) R package http://www-rcf.usc.edu/~fsun/Programs/NGS-MC/NGS-MC.html Species identification/taxonomic profiling CLARK Taxonomic classification of metagenomic...2385 days ago
3904 days ago
2489 days ago
3742 days ago
1295 days ago
Installing Covid19 Environment !
...to manually update the taxonomy databases before Krona can generate taxonomic reports. The update script is ktUpdateTaxonomy.sh. The default location for storing taxonomic databases is /home/vikas/anac...937 days ago
Comment on "Kraken: ultrafast metagenomic sequence classification using exact alignments"
Useful links https://genomics.sschmeier.com/ngs-taxonomic-investigation/index.html803 days ago