Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg genome asse...415 days ago
415 days ago
Comment on "Tools for Sequence translation !"
Sequence translation is the process of converting a DNA or RNA sequence into its corresponding protein sequence. This is an important step in the anal...421 days ago
Comment on "Tools for Differential expression analysis"
Differential expression analysis is a widely used technique in genomics and transcriptomics research that allows researchers to identify genes that ar...421 days ago
Comment on "Tools for RNA classification"
There are several tools available for RNA classification, each with its own strengths and limitations. Here are some commonly used tools: Inferna...421 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Genome synteny analysis is the comparison of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conducting a...423 days ago
Comment on "ncbi-datasets-cli -- Quickstart: command line tools !"
(base) [jnarayan@hn1 TOOLS]$ curl -o datasets 'https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/LATEST/linux-amd64/datasets' % Total % Received % Xferd Average Sp...880 days ago
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lumpy – lumpy: a general probabilis...1142 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
# envname is the name of your (existing) conda env conda activate envname # cpanm is available on either conda-forge or # bioconda, so add conda-forge (or look up # h...1182 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
Reapr is a tool trying to find explicit errors in the assembly based on incongruently mapped reads. It is heavily based on too low span coverage, or reads mapping to...1337 days ago