SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex) to infer autosomal and sex-linked genes (genes located...2172 days ago
BEAP: Blast Extension and Assembly Program
...of assembling the resulting sequences is achieved by using a known genome, such as human genome, as a reference. https://www.animalgenome.org/tools/beap/...2161 days ago
2161 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing...h more efficient than the state of art of aligners and error correction tools. MECAT can be used for effect...2192 days ago
2180 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
...etely with JavaScript and HTML5, with optional run-once data formatting tools written in Perl. Headline...source requirements. In fact, JBrowse has no back-end server code, just tools for formatting data files to...2143 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
KAT is a suite of tools that analyse jellyfish hashes or se...q) using kmer counts. The following tools are currently available in KA...estimator Tool. filter: Filtering tools. Contains tools for filtering...provided hash. plot: Plotting tools. Contains several plotting to...1987 days ago
Merqury: reference-free quality and phasing assessment for genome assemblies
...of this read set can be used for independently evaluating assembly quality without the need of a high quality reference. Merqury provides a set of tools for this purpose. https://gi...1435 days ago
GFinisher: a new strategy to refine and finish bacterial genome assemblies
GFinisher is an application tools for refinement and finalization of prokaryotic genomes assemblies using the bias of GC Skew to identify assembly errors and organizes the contigs/s...2116 days ago
2104 days ago