List of gene ontology software and tools
...uite for functional analysis of experimental data. MetaCore is based on a curated database of human protein-protein, protein-DNA interactions, transcription factors, signaling and metabo...3707 days ago
Calling narrow and broad peaks from ChIP-Seq data
Know about the state-of-the-art algorithms implemented in Strand NGS for detecting the binding sites of transcription factor (narrow peaks) and enriched regions of histone modification (...3194 days ago
Encode sequencing data freely available to download and use for academic means
...ssays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription factors, followed by sequenci...3702 days ago
zPicture: A dynamic blastz alignment visualization
zPicture is a dynamic alignment and visualization tool that is based on blastz alignment program utilized by PipMaker. zPicture alignments can be automatically submitted to rVista 2.0 to identify conserved transcription factor binding sites.2284 days ago
Bio++ : C Language libraries for your biological need
...lip, DCSE, GenBank (sequence only).Sequence manipulation: truncation, concatenation, sub-sequences, etc.In silico molecular biology: (reverse) transcription, translation, replication.Sev...3945 days ago
3944 days ago
List of bioinformatics open source projects/software.
...cs Learning Tutorial (BLT) http://sourceforge.net/projects/biotutorial/ Educational interactive tutorials and 3D animations for Replication, Transcription, and Translation BioHaskell...3754 days ago
2015 days ago
1363 days ago
Bioinformatics JRF at IISER MOHALI
...gist Award (IYBA) research project funded by Department of Biotechnology (DBT). The project involves identification and characterization of transcription factors (TFs) from the Arabid...3920 days ago
Research fellow (PhD candidate) in computational biology – 2 positions
...the project “Integrated genomics - linking transcriptional and translational regulatio...process acting at multiple levels of which transcription and translation are the most...ues to monitor both active translation and transcription has made it possible to study...3659 days ago
The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3945 days ago
3864 days ago
How Genes are Regulated: Transcription Factors
Each cell in our body inherits the same master copy of DNA, but different cell types use it differently. Transcription Factors help influence which genes are used in which cell. Understa...3892 days ago
Retrovirus Replication 3D Animation
The example used is the HIV Lentivirus. This video does a great job describing "complex" retrovirus transcription in a visually appealing way that is sufficient in detail for upper level...3841 days ago
BrainSpan Atlas of the Developing Human Brain
The BrainSpan atlas- web source for revealing transcriptional mechanisms involved in human brain development. Article: http://www.nbcnews.com/science/science-news/maps-unborn-human-brains-point-medical-frontiers-n71336 Paper: http://www.nature.com/nature/journal/vaop/ncurrent/full/nature13185...Tags: neuroscience, brain, transcription, microarray, brain mapping
3678 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
The algorithm presented herein, Mining Algorithm for GenetIc Controllers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of TFs and cofactors in gene bodies and flanking regions in gene lists without an a priori binary classification of genes as...Tags: MAGIC, tool, predicting, transcription, factors, cofactors, driving, gene, sets, ENCODE, data
1253 days ago