Results for "usage"
Blogs
Software and Tools to detect structure variation with long reads !!
...wo pieces of software in this release: (1) a pre-processor that takes machineformat (.m5) BLASR files, and (2) MultiBreak-SV. For installation and usage instructions, see doc/MultiBr...2623 days ago
BBTools for bioinformatician !
...to be removed, and a variable hamming or edit distance to be specified. Usage: Code: $ dedupe.sh in=ass...s above a certain threshold. The shellscript is bbmapskimmer.sh and the usage is similar to bbmap.sh or map...2286 days ago
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Bookmarks
UCSC Genome Browser and Blat software !
...NIX platforms. To determine which set of binaries to download, type "uname -a" on the command line to display your machine type. In most cases the usage statement for the application...3015 days ago
Stand-alone programs for Bioinformatician
...ations see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome.ucsc.edu/goldenPath/help/bigWig.html View the file 'FOOTER' to see the usage statement for each of the app...2921 days ago
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Files
- perl script analyzing codon usage in an input sequence to evaluate how efficiently it will be expressed in Anopheles gambiae. The input codon usage table derived from highly‐expressed A. gambiae genes is appended below.
1657 days ago
Pages
Linux SSH Client Commands for Bioinformatics
Here come on let play with the following basic command line usage of the ssh client.1. Check your SSH Client Version:Checking for your SSH client is very sare, but sometimes it may b...3721 days ago
Check the Size of a directory & Free disk space.
...present in their filenames. 'df' - finding the disk free space / disk usage$ dfHmmm … now “d...'Avail' columns use kilobytes as the unit. The 'Use%' column shows the usage as a percentage which is also...3718 days ago
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Top-level pages
- ...of scientific literature (such as PUBMED, MEDLINE) provide additional functionality, e.g. they can search for similar articles based on word–usage analysis. Text recognition sy...
3963 days ago
Next generation sequencing in R or bioconductor environment
...nfrastructure are countOverlaps and summarizeOverlaps. For their proper usage, it is important to read the...ad counting per genome feature) DEXSeq (Inference of differential exon usage); parathyroidSE explains...3640 days ago
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Wire posts
News
BLAST+ 2.11.0 release is now available on FTP site !
BLAST+ 2.11.0 release is now available from our FTP site. The main advance is the ability to provide usage reports to NCBI to help us improve BLAST. This information is limited to th...1283 days ago
Opportunity posts
JRF/SRF at University of Calcutta
...of Junior Research Fellow in the DBT(DBT Twinning NER) sponsored project entitled “Protein folding kinetics is a selection force on shaping codon usage bias in the high expression g...3490 days ago
Big Data Science Using R and Hadoop - Training Program on February 8-10, 2017
...nting Machine Learning using R programming. Target Audience : The program is designed for data analysts who want to learn R programming and its usage in implementing machine learn...2695 days ago
- +1 more Opportunity posts
Bio-Scripts
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #Parse comman...1117 days ago
Retrieve NCBI GenBank records with a range of accession numbers
...if ( defined( $param{help} ) ) { print_usage(); exit(0); } if (...efined( $param{returnType} ) ) ) { print_usage(); exit(1); } $param...print $message; } } sub print_usage { print...2932 days ago
- +71 more Bio-Scripts
Tags
Check the Size of a directory & Free disk space.
The amount of databases we bioinformatician deal are just HUGE … In such cases, we always need to check our server for free spaces etc. I planned this article to explains 2 simple commands that most bioinformatician want to know when they start using Linux / BioLinux. First: Size of a dire...Tags: Bioinformatics, Computational Biology, Linux, du, df, Size, File, Usage, Space, Check, Linux
3718 days ago
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Comments
Comment on "Benchmarking Perl Module !"
Benchmarking a Perl module involves measuring the performance of the module in terms of its execution time and memory usage. This can be done using the Perl Bench...431 days ago
- Usage Summary Produce help page. Quickly check the software usage and available command line options....
1117 days ago
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