BOL: Results for "viral"

Results for "viral"

- Neelam Jha@neelam
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 201...
1055 days ago

- Jit@jit.aber
Kaiju
...uencing reads. Each read is directly assigned to a taxon within the NCBI taxonomy by comparing it to a reference database containing microbial and viral protein sequences. By defaul...
2877 days ago
- Jit@jit.aber
VirMet
...ion on Read the Docs. A set of tools for viral metagenomics. virmet is call...command subcommand syntax: virmet fetch --viral n, for example, downloads the...etch download genomes update update viral/bacterial database index&nbs...
2772 days ago
+8 more Bookmarks

- Jitendra Narayan@admin
Bioinformatics Definitions
...ge of the 3D structure of the binding site (or the structure of the complex with a ligand) to construct potential drugs, for example inhibitors of viral proteins or RNA. In addition...
3955 days ago
- Jit@jit.aber
Genome Assembly Tools and Software - PART1 !!
...cifically for scaffolding diploid genomes. HaploClique 0.1 – Viral Quasispecies Assembly from Pa...ploClique is a computational approach to reconstruct the structure of a viral quasispecies from next-genera...
2694 days ago
+1 more Top-level pages

- Jitendra Narayan@admin
100K Foodborne Pathogen Genome Project
...public database at the National Center for Biotechnology Information. 100K Genome Project, aims to sequence the genomes of 100,000 bacterial and viral genomes. http://100kgenome.v...
3931 days ago
- Rahul Agarwal@raag
320000 viruses in mammals yet to sequenced in future!!!
...o look at millions of unknown viruses at genomic level and understand the mechanism. According to available data, close to 70 per cent of emerging viral diseases such as HIV/AIDS, We...
3905 days ago
+4 more News

- Rahul Nayak@rahul
2 positions on the evolutionary analysis of biological sequences in Montpellier - France
...European VIROGENESIS project (http://www.kuleuven.be/english/research/EU/p/horizon2020/sc/sc1/Virogenesis), concerns the evolutionary analysis of viral sequences. Topics include --...
3150 days ago

- Jitendra Narayan@admin
The Upton (VBRC) lab
...C) focuses on large DNA viruses: Poxviruses African Swine Fever Viruses Iridoviruses Baculoviruses Research Area Custom searches of the viral databases Building new tools...
3956 days ago
- Rahul Nayak@rahul
Paolo Ruggerone Lab
...scheme to study the flux of antibiotics through porins and efflux systems Setup of protocol to integrate MD results in a ligand-based approach Viral inhibitors Interactions of s...
3877 days ago

- Manshi Raghubanshi@dreamgirl
Retrovirus Replication 3D Animation
...y that is sufficient in detail for upper level coursework and possibly graduate coursework. * Modes of action for some anti-viral drugs are also described. NOTE: The viral genome in the form of DNA sta...
3852 days ago

- Jit@jit.aber
Download the genome from NCBI using bash script/command
...'s|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_genomic.fna.gz|' > genomic_file_invertebrate # -for viral curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/assembly_summary.txt' | awk '...
2540 days ago
- Rahul Nayak@rahul
Download the gff files from NCBI using bash script/command
...'s|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_genomic.gff.gz|' > genomic_file_invertebrate # -for viral curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/assembly_summary.txt' | awk '...
2531 days ago

- Neelam Jha@neelam
Comment on "Calling variants in non-diploid systems"
...s where the number of samples is not known. This is the exact scenario we have here: in our sample we have multiple mitochondrial (or bacterial or viral) genomes, but we do not know...
1052 days ago