BOL

Finding coding regions in DNA sequences http://genome.crg.es/courses/Lisbon04/exercises/day2/Perl_programming/index.html #Perl #Genes #Script

reformat.sh in=reads.fq out=highQuality.fq maq=16 (that will throw away all reads with average quality below 16) #Filter #BBMap #Quality

PacBio genome assembly tools https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbx147/4590140 #PacBio #Assembly #Tools #SMRT #LongReads

10 PhD positions in Poland http://www.wb.uj.edu.pl/en_GB/studia/phd-biology/recruitment #Poland #PhD

PacBio Sequencing and Its Applications https://www.sciencedirect.com/science/article/pii/S1672022915001345 #PacBio #Application #NGS

LiftOver Howto http://genomewiki.ucsc.edu/index.php/LiftOver_Howto #LiftOver #HowTo

#Short #read #alignment: an #introduction https://www.sevenbridges.com/short-read-alignment-algorithms/

#N50 = contig length so that half of the contigs are longer and 1/2 of contigs are shorter

Convert 2bit to psl $ blat myAssembly.2bit -oneOff=0 -noHead myQueryContigSeqs.fa myHits.psl #Convert #psl #2bit #blat

Convert fasta to 2bit $ faToTwoBit myAssembly.fa myAssembly.2bit #Fasta #2bit #Convert

Jitter Plot in R http://r-statistics.co/Top50-Ggplot2-Visualizations-MasterList-R-Code.html#Jitter%20Plot #Plot #Jitter #R #Rscript

https://scrapy.org/ #extract #data #from #websites #webscraping

Bioinformatics Faculty Jobs at MAHARSHI DAYANAND UNIVERSITY, ROHTAK http://www.mdurohtak.ac.in/pdf18/Advt/ADvertisement%2028%20of%202018.pdf #MDU #ROHTAK

Bioinformatic jobs at TATA MEMORIAL CENTRE ADVANCED CENTRE FOR TREATMENT, RESEARCH AND EDUCATION IN CANCER (ACTREC) http://www.actrec.gov.in/data%20files/Vacancies/2018/ACTREC-Advt-A-1-(COR)-2018.pdf

Activate python version in Conda. $ source activate py27 To deactivate $ source deactivate #Python #Activate #Deactivate #Conda