BOL

Estimate the genome size https://bioinformatics.uconn.edu/genome-size-estimation-tutorial/ #Genome #Size #Estimate

#GFA to #Fasta file conversion. $ grep '^S' example.gfa |awk '{print ">"$2; print $3}' > example.fa

Bioinformatics resources https://github.com/danielecook/Awesome-Bioinformatics #Bioinformatics #Resources

Important #NGS tutorial http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/linux.html

#GFA to #FASTA file conversion. awk '/^S/{print ">"$2"\n"$3}' in.gfa | fold > out.fa

Learn D3.js - https://leanpub.com/D3-Tips-and-Tricks/read #D3dotJS #visualisation #plot

samtools view -f 256 Input.bam | awk '$6 ~/S/ && $7 == "=" {print $0}' > Secondary_clipped.sam

Bioinformatics jobs at http://svimsbic.org/SRF_Notification.pdf #SVIMSBIC #Bioinformatics

git basic commands https://confluence.atlassian.com/bitbucketserver/basic-git-commands-776639767.html #git #commands #gitcommand

Assessing an effective undergraduate module #teaching applied #bioinformatics to biology students http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005872

get the fasta genes using gff3 and genome.fa sequence: ~/Tools/bedtools2/bin/bedtools getfasta -fi vaga.fa -bed Adineta_vaga.v2.gff3 -fo Adineta_vaga_genes.fa

Graph visualization with R http://www.bioconductor.org/packages/release/bioc/vignettes/Gviz/inst/doc/Gviz.pdf #R #Graph #Gviz #Visualisation

https://www.mitomap.org/MITOMAP -A compendium of polymorphisms and mutations in human mitochondrial DNA #mtDNA #DBs

http://premc.org/conferences/pemed-personalized-precision-medicine/ #Conference #diagnostics #bioinformatics #drug discovery #therapies #NGS #Paris

https://github.com/vinta/awesome-python #Python #frameworks #libraries #software #resources