BOL

Leading edge analysis reports #Tags to indicate the percentage of #genes contributing to the #enrichment score, http://www.r-bloggers.com/leading-edge-analysis/ #R

You can also try perl -MXML::Simple -e 1

To #check if a #module #installed or not try perldoc -l XML::Simple

You can also try this on Ubuntu sudo perl -MCPAN -e 'upgrade'

#Upgrade the #perl in #Ubuntu $ sudo cpan cpan[1]> upgrade

Plot the coverage in R http://cnr.lwlss.net/SeqCoverage/ #BAM #SAM #R #NGS #Plot

The ggbio R plots http://www.tengfei.name/ggbio/docs/man/autoplot-method.html #Plot #R #Package #ggbio

#Hierarchical cluster analysis http://www.econ.upf.edu/~michael/stanford/maeb7.pdf

To know about your OS: lsb_release -ra #Trick #OS #Linux

#genoPlotR - plot #gene and #genome #maps project! http://genoplotr.r-forge.r-project.org/

Install terminal on right click on Ubuntu: sudo apt-get install nautilus-open-terminal ; nautilus -q ; #Ubuntu #Linux #Terminal #Open

Bioinformatics #scientist openings at #THSTI, India http://thsti.res.in/down_file.php?file=146770901039THS-RN-21-2016.pdf

#GATK and #Picard to filter low quality variants https://insidedna.me/tutorials/view/gatk-picard-filter-vcf-variants-snp

De #Bruijn #Graph #assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_dbg.pdf

Extract reference nucleotide from BAM file: samtools view your.bam | awk '{print substr( $10, 100, 1)}' #SAM #BAM #Samtools #Tricks #NGS