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exfat on ubuntu $ sudo apt-get install exfat-utils exfat-fuse #exfat #ubuntu #mount

Identify and Remove Outlier Samples!! https://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/HumanBrainTranscriptome/Identification%20and%20Removal%20of%20Outlier%20Samples%20-%20Illumina.pdf #Re

Forest plot https://cran.r-project.org/web/packages/forestplot/vignettes/forestplot.html #R #Forest #Plot #Example #Explanation #PrettyPlot

http://www.biorxiv.org/content/early/2016/10/05/079301 #omics #genetics#sequencing #animal

R pretty scripts http://www.ncss.com/software/ncss/ncss-plots-and-graphs/ #R #Script #Plot #Idea #Graph

A perl script for mapping fasta formated sequences to multiple reference sequences using one of several alignment programs. http://seq.crg.es/download/software/Miro/doc/run_Mapping.html #Perl #Script

Useful perl script http://homepages.ulb.ac.be/~dgonze/SCRIPTS/scripts.html #Perl #Script #Resource

https://github.com/gokceneraslan/awesome-deepbio #DeepLearning #Bioinformatics #DeepBio

Split the text file with line number in Linux: wc -l abc.txt and then: split -l 60000 abc.txt #Split #Break #Line #Ubuntu #Linux #Tricks

Bioinformatics trainee needed at Kalyani http://www.klyuniv.ac.in/upload/employment/AdvtBIFCentre_9.9.2016.pdf #Trainee #Kaluani

Number of thread in Linux: echo $(( `ps axms | wc -l` - 1)) #Thread #Info #Linux

Extract sequence by using Ids file (assuming one ids in a line): perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' ids.file fasta.file #PerlTricks #PerlOneliner #Perl #Extract #Ids #

Extract fasta sequence by Ids: perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file #Perl #PerlOneliner #PerlTrick #Extract #Ids #Fasta

Rename the fasta name perl -ane 'if(/\>/){$a++; @foo = split /\s+/;$_ = join '_', @foo; print "$_\n"}else{print;}' your.fasta > new.fa #PerlTrick #PerlOneliner #Perl

Understanding N50 http://jermdemo.blogspot.be/2008/11/calculating-n50-from-velvet-output.html #N50 #Assembly #Genome #Contigs