BOL

MafFilter: a highly flexible and extensible multiple genome alignment files processor http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3904536/ #MultipleGenomeAlignment #MAF #Genome #Alignment

transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences http://www.biomedcentral.com/1471-2105/6/156/ #Align #Genome

114 different tools out there for DNA/RNA assembly https://twitter.com/kbradnam/status/479039027249971201/photo/1 #Assembly #Genome #Tools

http://www.mousephenotype.org/ #Mouse #Genome #Mammmals #GenesCatalogue

Multiple Genome Rearrangements and Ancestors ! https://github.com/ablab/mgra/ #genome #ancestor #phylogeny

Integrated Genome Browser ! https://bitbucket.org/lorainelab/integrated-genome-browser #genome #Viz

SPAdes Genome Assembler! http://bioinf.spbau.ru/en/spades #Genome #Assembler #Omics #NGS

Bacterial genome assembly tips using Valvet http://pathogenomics.bham.ac.uk/blog/2009/09/tips-for-de-novo-bacterial-genome-assembly/ #Assembly #NGS #Bacteria #Genome #Tricks #Tips #Velvet

Download the human genome hg19 wget --timestamping 'ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/chromosomes/chr*.fa.gz' #Human #Genome #Download #UCSC

Installing a minimal UCSC genome browser mirror in Ubuntu 10.04 64 bits http://goo.gl/PWHxDd #UCSC #Genome