BOL

WGS/WES Mapping to Variant Calls - Version 1.0! http://www.htslib.org/workflow/ #Omics #NGS #WGS #SNP

Leveraging SVS for NGS Workflows http://blog.goldenhelix.com/?p=2787 #NGS #SVS

Scalpel-Genetic variants discovery tool !http://scalpel.sourceforge.net/index.html #Omics #NGS #InDels

Epiviz: interactive visual analytics for functional genomics data http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3038.html #Visual #Analytics #Genomics #NGS

Sequence analysis (methods) http://www.biomedcentral.com/bmcbioinformatics/sections/sequence_analysis_method #Methods #NGS #Sequence #Bioinformatics

47 seconds for a genomic analysis! http://nanthealth.com/big-numbers/47-seconds-for-a-complete-genomic-analysis/ #Seq #Omics #NGS

High-throughput sequence analysis with R and Bioconductor http://www.bioconductor.org/help/course-materials/2012/CSC2012/Bioconductor-tutorial.pdf #R #Bioconductor #NGS #Analysis

Learn Galaxy at https://wiki.galaxyproject.org/Learn #Galaxy #Learn #NGS #Genomics

Linux one-liner. https://wikis.utexas.edu/display/bioiteam/Scott%27s+list+of+linux+one-liners #Linux #Oneliner #NGS

Live webinar on long reads! http://programs.pacificbiosciences.com/l/1652/2014-06-16/2w46dr #PacBio #LongReads #NGS #Omics #Seq

https://github.com/chapmanb/bcbio-nextgen #NGS #SNP #Variants #RNASeq

SPAdes Genome Assembler! http://bioinf.spbau.ru/en/spades #Genome #Assembler #Omics #NGS

RAMICS substantially outperforms other mapping approaches for alignment of coding DNA to reference sequences. http://hiv.sanbi.ac.za/tools#/ramics #Tools #Alignment #NGS #RAMICS

Bioinformatics tutorial at http://www.ebi.ac.uk/training/online/course/ebi-next-generation-sequencing-practical-course/how-take-course #Tutorial #Notes #NGS #EBI #Online #Course

Assemble short reads http://ged.msu.edu/angus/tutorials/short-read-assembly.html #Tutorial #ABySS #Bacteria #Reads #Assembly #Genomics #NGS