Results for "Gene enrichment"
Blogs
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same...ether it encompasses multiple genes, an area containing single g...define synteny as “Two genes which occur on the same chro...ertain evolutionary important genes play an important role in ev...s conservation of large-scale gene order...2601 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of ass...iological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is des...St retrieves most significant Gene Ontology (GO) terms, KEGG and REACT...archers, in the annotation of gene products with terms from the Gene O...3701 days ago
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Bookmarks
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to anal...assembling genomes, comparing DNA and protein sequences, predicting genes, finding regulatory motifs, analyzing gene expre...
3936 days ago
Should you get sequenced? Not all bad genes predict disease
“What we really don’t know yet is whether the predictive aspects of the genome are going to turn out...ne we are fighting against this society-wide misconception that having the bad gene means...3893 days ago
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Files
- Liver cancer is third leading cause of deaths and fourth most frequent occuring cancer worldwide. The...small RNA molecules known to inhibit mRNA expression of particular gene by binding improperly to 3'UTR region of a gene and h...
3552 days ago
- SPAdes—St. Petersburg genome Assembler—was originally developed for de novo assembly of genome sequen...s and transcriptomes as well as assembly of putative plasmids and biosynthetic gene clust...
815 days ago
Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3936 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it...formatics, including sequence analysis,phylogenetics, molecular evolution and population genetics.Bio++ is designed in an e...decomposition, inversion, etc.Random number generation...3938 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, dat...mely high descriptive power. Classes for Multiple alignment (Bio::Alignment), Gene Ontol...3938 days ago
- +7 more Pages
Top-level pages
- "Bioinformatics is a science of biological predictions and analy...th System's Symphony of Life: Genetics & Medicine Web site."...the information stored in the genetic code, but also experimenta...3D structure alignment, phylogenetic tree construction, predict...ide polymorphisms to hunt for genetic so...
3938 days ago
- Data mining, the extraction of hidden predictive information from large...y, it’s becoming more common to generate reams of data then ask so...ore, people working in bioinformatics generally come from computer scien...s: Tools for Mining and Applying Genetic In...
3937 days ago
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Wire posts
News
Lateral Gene Transfer Is Enriched in Cancer Samples
There has been always a confusion on cancer and bacteria relationship. This is the first paper which shows lateral gene transfer causes cancer. Find more at http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.10031073931 days ago
R package for visualising GO enrichment
An R package that visualizes the GO enrichment results as word clouds and arranges them together with fig...analyses such as differential expression or clustering, where for each gene list we display its behaviour in th...3931 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 labor...ster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data a...k between sequence variation, functional variation, gene/prote...3940 days ago
- van Noort Group is looking for PhD fellows We currently access an unprecedented kno...his young computational systems biology group is to generate biological sense from the...will be exploited to better understand two complex genetic tr...
3940 days ago
- +49 more Opportunity posts
ResearchLabs posts
The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3939 days ago
- Statistical functional genomics in experimental medicine The genome projects and the accelerated development of...cal backgrounds. Research Area: Linear models for microarray data Digital gene expre...
3939 days ago
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Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, n...ak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST k...jayenge Raju ban gaya Genefinder. Har Ligand jo dock ka...BLAST To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Databas...Maine Bhi ClustalW Kiya Hai GeneScan K...3909 days ago
- 1. A futuristic computational biology student was told to write "It is in my gene!!!" on the board 100 times as a...$count++) { print "It is in my gene!!!";}I guess, he is gonna to...; $startGene=$1; &n...sked the bartender:CREATE TABLE gene IF NO...
3692 days ago
Video
How Genes are Regulated: Transcription Factors
Each cell in our body inherits the same master copy of DNA, but different cell types u...erently. Transcription Factors help influence which genes are used in which cell. Unde...model their binding to DNA and their regulation of gene expre...3886 days ago
DNA is packaged in a chromosome experiment
For more information, log on to- http://shomusbiology.weebly.com/ Download the study materials here...ates an added layer of regulatory control, which ensures correct gene expression. Nucleosomes are thought to carry epigeneticall...3867 days ago
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Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.or...en(seqs)) from Bio import Entrez allseq = {} for x in seqs: if 'gene-region' in x and x['gene-regio...1127 days ago
Parse a genbank file using regular expressions
#! /usr/local/bin/perl -w $genbank = "genbank_file.txt"; open (GENBANK, $genbank) || die "canno...ANISM\s*)(.*)/) { print "Organism: $2\n"; } elsif(/(gene)(\s*)(\d*)(\.\.)(\d*)/) { print "Gene lengt...2908 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at T...it based on this profile. Alterations in the gene, transcript, protein, and met...ou will be retired, what would you tell next generation...2353 days ago
Groups
Our research interest falls in the broad field of bioinformatics and, more specifically into Computational...CGH (Comparative Genomic Hybridization) microarrays Computational genetics Candidate gene prior...3934 days ago
This group is being designed to cover some of the common algorithms underlying the following fundament...assembling genomes, comparing DNA and protein sequences, predicting genes, finding regulatory motifs, analyzing gene expre...3893 days ago
Tags
Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
GeneSCF is more reliable compared to other enrichment tools because of its ability to use reference functional databases in real-time to perform enrichment analysis. It is an easy-to-integrate tool with other pipelines available for downstream analysis of high-throughput data. More importantly, G...Tags: Enrichment analysis, KEGG, Gene Ontology, REACTOME, pathways, cancer enrichment, Functional annotation, Gene enrichment
2776 days ago
Comments
Comment on "List of gene ontology software and tools"
Chen EY, Tan CM, Kou Y, Duan Q, Wang Z, Meirelles GV, Clark NR, Ma'ayan A. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinformatics. 2013;128(14). http://amp.pharm.mssm.edu/Enrichr/1483 days ago
Comment on "List of gene ontology software and tools"
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statist...2886 days ago
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