Results for "UG"
Bio-Scripts
Perl script introduces control structures, arrays and hashes.
...rict; use warnings; my @first_array = ('DNA', 'ATGCGTGC', 5, 'RNA', 'AUGC'); print $first_array[0], "...ol Loop: for for (my $i=0; $i 'ATCGATGCT', 'RNA' => 'AUGC', 'Number o...2853 days ago
- ...Databases size scales linearly with sequence length. With default parameters,databases are are roughly 150k per bas...
2684 days ago
Extract fasta sequence from a multifasta file with coordinates
...subseq = $seq->subseq(4_000_000 => 4_100_000); my $trunc = $seq->trunc(4_000_000 => 4_100_000); my $length = $seq->length; # Loop through sequence objects my $stre...2523 days ago
Genetic Algorithms demonstration with word DNA in Perl
...on; # population size # create the weights array: select only survivors from the population, # then use map to have only the fitness come through my @weights = map { $_->{f...2363 days ago
Create genome scaffolding with Perl
...; use strict; use English; use Pod::Usage; ## uses pod documentation in usage code use Getopt::Long qw(:config auto_version auto_help pass_through); our $VERSION = "1.00";...2299 days ago
- # Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe19
2255 days ago
Estimate Genome Size with Jellyfish and R
jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? /common/Tutorial/Genome_estimation/sample_read_1.fastq /common/Tutorial/Genome_estimation/sample_re...2237 days ago
Biological Sequence handling with Perl !
...'S',UCC => 'S',UCU => 'S', UUU => 'F',UUC => 'F',UUA => 'L',UUG => 'L', UAU => 'Y',UAC => 'Y',UAA => '*',UAG => '*', UGU => 'C',UGC => 'C',UGA => '*'...2172 days ago
- .../bash #set the path export PATH=$PATH:/home/urbe/Tools/augustus-3.2.3/bin export PATH=$PATH:/home/urbe/Tools/augustus-3.2.3/scripts export AUGUSTUS_CONFIG_PATH=/home/urbe/Tools/augustus-3.2.3/config #run BUS...
2128 days ago
- ...----------------------------------------------------- Monday, July 9, 2018: 11:18:50 CMD: /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity-plugins/BIN/ParaFly -c recursive_t...
2118 days ago
