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• • Jit@jit.aber

  

  Jit bookmarked StringTie Transcript assembly and quantification for RNA-Seq 2286 days ago

  StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length...

  https://ccb.jhu.edu/software/stringtie/
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 2286 days ago

  Long-read human genome sequencing and its applications https://www.nature.com/articles/s41576-020-0236-x #LongReads #Sequencing #Genome #Review
• • Jit@jit.aber

  

  Jit bookmarked Merqury: reference-free quality and phasing assessment for genome assemblies 2289 days ago

  Often, genome assembly projects have illumina whole genome sequencing reads available for the assembled individual. The k-mer spectrum of this read set can be used for independently evaluating assembly quality without the need of a high quality...

  https://github.com/marbl/merqury
• • Jit@jit.aber

  

  Jit commented on the blog Tools to detect synteny blocks regions among multiple genomes 2290 days ago

  halSynteny is the latest input in computational synteny  halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome...
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra bookmarked HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures 2290 days ago

  The HNADOCK server is to predict the binding complex structure between two nucleic acid molecules through a hierarchical docking algorihtm of an FFT-based global search strategy and an intrinsic scoring function for nucleic acid interactions. Users...

  http://huanglab.phys.hust.edu.cn/hnadock/
• • Neel@neelam

  

  Neel posted to the wire 2291 days ago

  Application of Support Vector Machines in Bioinformatics https://www.csie.ntu.edu.tw/~p88012/Bio_SVM.pdf #Bioinformatics #Application #SVM
• • Jit@jit.aber

  

  Jit bookmarked ShinyGO v0.61: Gene Ontology Enrichment Analysis + more 2292 days ago

  2/3/2020: Now published by Bioinformatics. 11/3/2019: V 0.61, Improve graphical visualization (thanks to reviewers). Interactive networks and much more. 5/20/2019: V.0.60, Annotation database updated to Ensembl 96. New bacterial and fungal...

  http://bioinformatics.sdstate.edu/go/
• • biogeek@biogeek

  

  biogeek commented on a page titled Learning Python Programming - a bioinformatician perspective ! 2292 days ago

  Python for Biologist http://userpages.fu-berlin.de/digga/p4b.pdf
• • BioStar@biostar

  

  BioStar bookmarked gggenes: a ggplot2 extension for drawing gene arrow maps. 2293 days ago

  Install the stable version of gggenes from CRAN: install.packages("gggenes") If you want the development version, install it from GitHub: devtools::install_github("wilkox/gggenes") More at https://github.com/wilkox/gggenes

  http://wilkox.org/gggenes
• • Jitendra Narayan@admin

  

  Jitendra Narayan is now a friend with Pallavi 2294 days ago

  • Jitendra Narayan@admin

  

  • Pallavi@pallavi

  
• • Pallavi@pallavi

  

  Pallavi is now a friend with Jitendra Narayan 2294 days ago

  • Pallavi@pallavi

  

  • Jitendra Narayan@admin

  
• • Jit@jit.aber

  

  Jit published a blog post Useful links to therapy, disease, drug and drug-target network data: 2294 days ago

  Useful resources to therapy, disease, drug and drug-target network data
• • BioStar@biostar

  

  BioStar commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 2294 days ago

  Journal of Theoretical Biology also accept computational papers  https://www.journals.elsevier.com/journal-of-theoretical-biology
• • Jit@jit.aber

  

  Jit posted to the wire 2295 days ago

  #Primer3Plus (http://primer3plus.com/) can be used to design the primer sequences #Primer
• • Jit@jit.aber

  

  Jit bookmarked SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX. 2295 days ago

  SynVisio lets you explore the results of McScanX a popular synteny and collinearity detection toolkit and generate publication ready images. SynVisio requires two files to run: The simplified gff file that was used as an...

  https://synvisio.github.io/#/
• • Jit@jit.aber

  

  Jit bookmarked Supernova: generates phased, whole-genome de novo assemblies from a Chromium-prepared library. 2295 days ago

  Supernova generates phased, whole-genome de novo assemblies from a Chromium-prepared library. Please see Achieving Success with De Novo Assembly and System Requirements before creating your Chromium libraries for...

  https://support.10xgenomics.com/de-novo-assembly/software/pipelines/latest/using/running
• • Jit@jit.aber

  

  Jit bookmarked Parliament2: Runs a combination of tools to generate structural variant calls on whole-genome... 2297 days ago

  Parliament2 identifies structural variants in a given sample relative to a reference genome. These structural variants cover large deletion events that are called as Deletions of a region, Insertions of a sequence into a region, Duplications of a...

  https://github.com/dnanexus/parliament2
• • BioStar@biostar

  

  BioStar posted to the wire 2298 days ago

  Learn bioinformatics online at https://www.ebi.ac.uk/training/online/ #Bioinformatics #Learn #Online
• • Jit@jit.aber

  

  Jit created a new bio-script Copy files from/to Docker 2300 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 2300 days ago

  Bioinformatics tools are published by this journal f1000research  https://f1000research.com/for-authors/article-guidelines/software-tool-articles  

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