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• • Radha Agarkar@radhaagarkar

  

  Radha Agarkar bookmarked Filtlong: quality filtering tool for long reads 2313 days ago

  Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the...

  https://github.com/rrwick/Filtlong
• • Neel@neelam

  

  Neel posted to the wire 2313 days ago

  Learn Perl6 https://learnxinyminutes.com/docs/perl6/ #perl6 #Raku
• • Jit@jit.aber

  

  Jit posted to the wire 2315 days ago

  Ten Simple Rules for a successful remote postdoc https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007809 #PostDoc #Remote
• • Neel@neelam

  

  Neel commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 2316 days ago

  Bioinformatics jobs in Africa https://www.mncjobs.co.za/search-jobs/bioinformatics
• • biogeek@biogeek

  

  biogeek commented on a bookmark Coronavirus Resources ! 2319 days ago

  Genome detective https://www.genomedetective.com/app/typingtool/virus/
• • Jit@jit.aber

  

  Jit commented on a bookmark Coronavirus Resources ! 2319 days ago

  SARS-CoV-2 SNP Calling pipeline https://github.com/DamienFr/CoV-homoplasy
• • Jit@jit.aber

  

  Jit commented on a bookmark Coronavirus Resources ! 2319 days ago

  UK Covid consortium https://www.cogconsortium.uk/data/
• • Jit@jit.aber

  

  Jit commented on a bookmark Coronavirus Resources ! 2319 days ago

  CoViD Selection analysis http://virological.org/t/selection-analysis-of-gisaid-sars-cov-2-data/448
• • Jit@jit.aber

  

  Jit commented on a bookmark Coronavirus Resources ! 2319 days ago

  UK resource in CoViD19 http://cov-glue.cvr.gla.ac.uk/#/home https://macman123.shinyapps.io/ugi-scov2-alignment-screen/
• • Jit@jit.aber

  

  Jit commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 2321 days ago

  Molecular informatics journal is also a good alternative for bioinformatics tools publication https://onlinelibrary.wiley.com/toc/18681751/2020/39/4
• • Jit@jit.aber

  

  Jit bookmarked Synteny and Rearrangement Identifier (SyRI) 2321 days ago

  SyRI is a comprehensive tool for predicting genomic differences between related genomes using whole-genome assemblies (WGA). The assemblies are aligned using whole-genome alignment tools, and these alignments are then used as input to SyRI. SyRI...

  https://schneebergerlab.github.io/syri/
• • Jit@jit.aber

  

  Jit bookmarked NucDiff: In-depth characterization and annotation of differences between two sets of DNA sequences 2321 days ago

  NucDiff locates and categorizes differences between two closely related nucleotide sequences. It is able to deal with very fragmented genomes, structural rearrangements and various local differences. These features make NucDiff to be perfectly...

  https://github.com/uio-cels/NucDiff
• • Shruti Paniwala@shruti

  

  Shruti Paniwala created a new bio-script Install kraken on linux 2322 days ago
• • BioStar@biostar

  

  BioStar bookmarked HASLR: a hybrid assembler which uses both second and third generation sequencing reads 2322 days ago

  HASLR, a hybrid assembler which uses both second and third generation sequencing reads to efficiently generate accurate genome assemblies. Our experiments show that HASLR is not only the fastest assembler but also the one with the lowest number of...

  https://github.com/vpc-ccg/haslr
• • Neel@neelam

  

  Neel created a new bio-script Install Ragout genome assembler 2324 days ago
• • biogeek@biogeek

  

  biogeek asked error: mate does not occur next to it in your BAM file. How to fix it ? 2324 days ago

  *****WARNING: Query v300043428L4C001R0481272249 is marked as paired, but its mate does not occur next to it in your BAM file.  Skipping.
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked RefKA: A fast and efficient long-read genome assembly approach for large and complex genomes 2325 days ago

  RefKA, a reference-based approach for long read genome assembly. This approach relies on breaking up a closely related reference genome into bins, aligning k-mers unique to each bin with PacBio reads, and then assembling each bin in parallel...

  https://github.com/AppliedBioinformatics/RefKA
• • Shruti Paniwala@shruti

  

  Shruti Paniwala answered the question How to filter out host reads from paired-end fastq files? 2328 days ago

  a) bowtie2 mapping against host sequence Host example: human genome hg19 (download bowtie2 hg19 index)# 1) create bowtie2 index database (host_DB) from host reference genomebowtie2-build host_genome.fna host_DB# 2) bowtie2...
• • Neel@neelam

  

  Neel asked How to filter out host reads from paired-end fastq files? 2328 days ago

  How to filter out host reads from paired-end fastq files?
• • BioStar@biostar

  

  BioStar published a news post Primer BLAST ! 2328 days ago

  Max 3' match

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