BOL

Latest activity

• • Jit@jit.aber

  

  Jit bookmarked gSearch: a fast and flexible general search tool for whole-genome sequencing 2959 days ago

  gSearch compares sequence variants in the Genome Variation Format (GVF) or Variant Call Format (VCF) with a pre-compiled annotation or with variants in other genomes. Its search algorithms are subsequently optimized and implemented in a...

  http://ml.ssu.ac.kr/gSearch/index.html
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked Fastq stats in Emoji :) 2959 days ago

  Read one or more FASTQ files, fastqe will compute quality stats for each file and print those stats as emoji... for some reason. Given a fastq file in Illumina 1.8+/Sanger format, calculate the mean (rounded) score for each position and...

  https://github.com/lonsbio/fastqe
• • Rahul Nayak@rahul

  

  Rahul Nayak posted to the wire 2959 days ago

  Understanding PairedEnd(PE) mapping https://davetang.org/muse/2014/07/24/getting-started-paired-end-reads/ #PE #Paired #End #PairedEnd #Mapping #Map #Learn
• • Rahul Nayak@rahul

  

  Rahul Nayak commented on a bookmark CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing. 2959 days ago

  ➜ bin git:(master) ✗ ./canu usage: canu [-version] [-citation] \ [-correct | -trim | -assemble | -trim-assemble] \ [-s <assembly-specifications-file>] \ -p <assembly-prefix> \ -d <assembly-directory> \...
• • Rahul Nayak@rahul

  

  Rahul Nayak created a new bio-script Perl script to find palindromic pattern ! 2959 days ago
• • Jit@jit.aber

  

  Jit created a new bio-script Running REAPR ! 2959 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak posted to the wire 2959 days ago

  du -sh * | sort | grep "G" #List size of all the directory #Size #List #Directory #Linux
• • Rahul Nayak@rahul

  

  Rahul Nayak commented on a bookmark Nanopolis: polish a genome assembly 2959 days ago

  # Index the draft genome bwa index draft.fa # Align the basecalled reads to the draft sequence bwa mem -x ont2d -t 8 draft.fa reads.fa | samtools sort -o reads.sorted.bam -T reads.tmp - samtools index reads.sorted.bam python...
• • Jit@jit.aber

  

  Jit posted to the wire 2963 days ago

  #Remove #smartbell from #pacbio #removesmartbell.sh https://github.com/BioInfoTools/BBMap/blob/master/sh/removesmartbell.sh
• • Jit@jit.aber

  

  Jit bookmarked LSC :a long read error correction tool 2963 days ago

  Getting Started These simple steps will help you integrate LSC into your transcriptomics analysis pipeline. Read the LSC_requirements for running LSC. Download and set-up the LSC package. Follow the tutorial to see how...

  https://www.healthcare.uiowa.edu/labs/au/LSC/
• • fanhhuizhong@fanhuizhong

  

  fanhhuizhong is now a friend with Shruti Paniwala 2963 days ago

  • fanhhuizhong@fanhuizhong

  

  • Shruti Paniwala@shruti

  
• • Shruti Paniwala@shruti

  

  Shruti Paniwala is now a friend with fanhhuizhong 2963 days ago

  • Shruti Paniwala@shruti

  

  • fanhhuizhong@fanhuizhong

  
• • fanhhuizhong@fanhuizhong

  

  fanhhuizhong is now a friend with Seema Singh 2963 days ago

  • fanhhuizhong@fanhuizhong

  

  • Seema Singh@seema

  
• • Seema Singh@seema

  

  Seema Singh is now a friend with fanhhuizhong 2963 days ago

  • Seema Singh@seema

  

  • fanhhuizhong@fanhuizhong

  
• • fanhhuizhong@fanhuizhong

  

  fanhhuizhong is now a friend with Anjana 2963 days ago

  • fanhhuizhong@fanhuizhong

  

  • Anjana@anjana

  
• • Anjana@anjana

  

  Anjana is now a friend with fanhhuizhong 2963 days ago

  • Anjana@anjana

  

  • fanhhuizhong@fanhuizhong

  
• • Jit@jit.aber

  

  Jit posted to the wire 2965 days ago

  Scrubbing long reads https://dazzlerblog.wordpress.com/2017/04/22/1344/ #Scrub #Long #Reads #Pacbio
• • Jit@jit.aber

  

  Jit posted to the wire 2965 days ago

  Genome assembly https://www2.eecs.berkeley.edu/Pubs/TechRpts/2016/EECS-2016-43.pdf #Genome #Assembly #Tutorial
• • Jit@jit.aber

  

  Jit bookmarked REVIGO: Reduced Visualize gene ontology 2965 days ago

  REViGO can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms. The remaining terms can be visualized in semantic similarity-based scatterplots, interactive graphs, or tag clouds. More about...

  http://revigo.irb.hr/
• • Jit@jit.aber

  

  Jit bookmarked nanofilt: Filtering and trimming of long read sequencing data 2966 days ago

  Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and...

  https://github.com/wdecoster/nanofilt

  Comments

  • • Rahul Nayak@rahul

    

    Rahul Nayak 2900 days ago

    Nanofilt steps https://gigabaseorgigabyte.wordpress.com/2017/06/05/trimming-and-filtering-oxford-nanopore-sequencing-reads/

• « Previous
• 120
• 121
• 122
• 123
• 124
• 125
• 126
• 127
• 128
• 129
• 130
• Next »