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• • BioStar@biostar

  

  BioStar created a new bio-script Perl script to extract a sequence from multifasta with range ! 2926 days ago
• • BioStar@biostar

  

  BioStar bookmarked P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads 2927 days ago

  P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold genome fragments. The method is suitable for most genomes. The program could utilize Illumina Paired-end RNA-sequencing reads from target speciesies. Our method provides...

  http://www.fishbrowser.org/software/P_RNA_scaffolder/#
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh posted to the wire 2928 days ago

  Efficiency of #PacBio long read #correction by 2nd generation #Illumina sequencing https://www.sciencedirect.com/science/article/pii/S0888754317301660
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh bookmarked LSC: Improving PacBio Long Read Accuracy by Short Read Alignment 2928 days ago

  Added Command line argument support. Multi-stage execution modes. Support for parallelization. Now execution proceeds in batches of long reads the size of which can be set by --long_read_batch_size N. Better compressed intermediate files. Added...

  https://www.healthcare.uiowa.edu/labs/au/LSC/
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh bookmarked LoRMA: A tool for correcting sequencing errors in long reads 2928 days ago

  An error correction method that uses long reads only. The method consists of two phases: first, we use an iterative alignment-free correction method based on de Bruijn graphs with increasing length of k-mers, and second, the corrected reads are...

  https://gite.lirmm.fr/lorma/lorma-releases/wikis/home
• • BioStar@biostar

  

  BioStar posted to the wire 2929 days ago

  #Nigerian Society for #Bioinformatics and Computational Biology (#NISBCB) http://cubre.covenantuniversity.edu.ng/index.php/nigeria-society-for-bioinformatics-and-computatational-biology-nisbcb/#.W4_7m
• • BioStar@biostar

  

  BioStar bookmarked DEPARTMENT OF GENETICS, GENOMICS AND BIOINFORMATICS, National Biotechnology Development Agency,... 2929 days ago

  The Genetics, Genomics & Bioinformatics Department (GBBD) at NABDA is unique, encompassing all facets of modern genetics and bioinformatics research. Trans-disciplinary research being conducted in our laboratories would lead to cures for human...

  http://www.nabda.gov.ng/departments/genetics-genomics-and-bioinformatics
• • BioStar@biostar

  

  BioStar posted to the wire 2929 days ago

  Bioinformatics in Nigeria http://bioinformatics.ui.edu.ng/ #Nigeria #Bioinformatics
• • BioStar@biostar

  

  BioStar posted to the wire 2929 days ago

  Computational Biology and Bioinformatics in Nigeria https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998874/ #Nigeria #Bioinformatics #Scope
• • Rahul Nayak@rahul

  

  Rahul Nayak posted to the wire 2929 days ago

  Multi-line fasta to single line fasta $ perl -pe '/^>/ ? print "\n" : chomp' in.fasta | tail -n +2 > out.fasta #Multiline #Singleline #Fasta
• • Rahul Nayak@rahul

  

  Rahul Nayak published a blog post Setting python version as default on Linux 2930 days ago

  If you have a later version than 2.6 you'll need to set 2.6 as the default Python.
• • Rahul Nayak@rahul

  

  Rahul Nayak posted to the wire 2930 days ago

  Snakemake install Ubuntu $ sudo apt-get install snakemake #snakemake #Ubuntu #Install
• • Jit@jit.aber

  

  Jit bookmarked Snakemake—a scalable bioinformatics workflow engine 2932 days ago

  Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow. 

  https://bioconda.github.io/recipes/snakemake/README.html
• • BioStar@biostar

  

  BioStar commented on a page titled List of Bioinformatics and Computational Biology Journals 2934 days ago

  You can also bioinformatics tools at https://www.journals.elsevier.com/information-and-software-technology/short-communications/information-and-software-technology-now-publishing-short-com
• • BioStar@biostar

  

  BioStar is now a friend with Anjana 2934 days ago

  • BioStar@biostar

  

  • Anjana@anjana

  
• • Anjana@anjana

  

  Anjana is now a friend with BioStar 2934 days ago

  • Anjana@anjana

  

  • BioStar@biostar

  
• • Jit@jit.aber

  

  Jit created a new bio-script Update zsh on Ubuntu ! 2935 days ago
• • Jit@jit.aber

  

  Jit created a new bio-script Downloading GATK ! 2935 days ago
• • Neel@neelam

  

  Neel uploaded the file Applied Statistics for Bioinformatics using R in the group R and Bioconductor 2935 days ago

  The purpose of this book is to give an introduction into statistics in order to solve some problems of bioinformatics. Statistics provides procedures to explore and visualize data as well as to test biological hypotheses. The book intends to be...
• • Neel@neelam

  

  Neel commented on a page titled List of Bioinformatics and Computational Biology Journals 2936 days ago

  Publish scripts at The Journal of Open Source Software http://joss.theoj.org/about

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