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• • Jit@jit.aber

  

  Jit bookmarked LRCstats: Long Read Correction Statistics 2647 days ago

  LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced by Pacific Biosciences. The reads produced by third generation...

  https://github.com/cchauve/lrcstats
• • Jit@jit.aber

  

  Jit bookmarked ECTOOLS: Long Read Correction and other Correction tools 2647 days ago

  Long Read Correction and other Correction tools This package is a loose collection of scripts. To run the correctionroutine see the section below. Descriptions of the other scriptsare at the bottom of this file. Contact: gurtowsk@cshl.edu In...

  https://github.com/jgurtowski/ectools
• • Jit@jit.aber

  

  Jit bookmarked Jabba: Hybrid Error Correction for Long Sequencing Reads 2647 days ago

  Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation (Illumina) data. Input Jabba takes as input a concatenated de Bruijn graph and a set of sequences: the de Bruijn graph...

  https://github.com/biointec/jabba
• • Rahul Agarwal@raag

  

  Rahul Agarwal posted to the wire 2648 days ago

  PhD call for bio‐omic sciences Deadline 15 March 2018 : ls-phd.ceitec.cz/ #Phd #Czech #StructuralBiology #Omics
• • Rahul Agarwal@raag

  

  Rahul Agarwal posted to the wire 2648 days ago

  Nice Short Review-Disease Biomarkers for Precision Medicine: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5414969/ #Omics #Cancer #PrecisionMedice
• • Rahul Agarwal@raag

  

  Rahul Agarwal posted to the wire 2648 days ago

  Network-guided GWAS Analysis-http://giant.princeton.edu/gwas/create_new #GWAS #Phenotype #Genetics #Disease
• • Jit@jit.aber

  

  Jit created a new bio-script Insert the sequence at desire location in multi-fasta file with Perl 2649 days ago
• • Jit@jit.aber

  

  Jit bookmarked Seal: SEquence ALignment evaluation suite 2649 days ago

  Seal is a comprehensive sequencing simulation and alignment tool evaluation suite. This software (implemented in Java) provides several utilities that can be used to evaluate alignment algorithms, including: Reading a pre-existing reference...

  http://compbio.case.edu/seal/
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra posted to the wire 2649 days ago

  Convert interleaved to separate files with BBmap. $ reformat.sh in=reads.fq out1=reads_r1.fq out2=reads_r2.fq #interleave #fastq #seperate #reformat #bbmap
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra commented on a page titled BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries 2649 days ago

  One more intersting approach by Sonal Singhal @ https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra created a page BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries 2649 days ago

  BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains an exact repeat somewhere, reads mapping to it will...

  Comments

  • • Poonam Mahapatra@poonam

    

    Poonam Mahapatra 2649 days ago

    One more intersting approach by Sonal Singhal @ https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads
• • Jit@jit.aber

  

  Jit posted to the wire 2649 days ago

  Learn algorithms https://github.com/rushter/MLAlgorithms #Algorithms #Learn
• • BioStar@biostar

  

  BioStar posted to the wire 2649 days ago

  Filtration https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads
• • BioStar@biostar

  

  BioStar posted a new ad in the Opportunity Junior Research Fellow position at Translational Health Group, ICGEB, New Delhi 2650 days ago
• • BioStar@biostar

  

  BioStar is now a friend with biogeek 2650 days ago

  • BioStar@biostar

  

  • biogeek@biogeek

  
• • biogeek@biogeek

  

  biogeek is now a friend with BioStar 2650 days ago

  • biogeek@biogeek

  

  • BioStar@biostar

  
• • Jit@jit.aber

  

  Jit posted to the wire 2651 days ago

  Definition of homologous #synteny blocks http://science.sciencemag.org/content/sci/suppl/2005/07/20/309.5734.613.DC1/Murphy.SOM.pdf
• • Jitendra Narayan@admin

  

  Jitendra Narayan posted to the wire 2651 days ago

  BOL wish you a very happy new year. #BOL #BOLover #2018 #Wish
• • Jit@jit.aber

  

  Jit commented on a bookmark Venn Diagrams on R Studio 2653 days ago

  Six-way Venn diagram https://stackoverflow.com/questions/32440128/nice-looking-five-sets-venn-diagrams
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra bookmarked JPred4: A Protein Secondary Structure Prediction Server 2654 days ago

  JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure...

  http://www.compbio.dundee.ac.uk/jpred4/

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