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• • Jit@jit.aber

  

  Jit bookmarked Seal: SEquence ALignment evaluation suite 2565 days ago

  Seal is a comprehensive sequencing simulation and alignment tool evaluation suite. This software (implemented in Java) provides several utilities that can be used to evaluate alignment algorithms, including: Reading a pre-existing reference...

  http://compbio.case.edu/seal/
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra posted to the wire 2566 days ago

  Convert interleaved to separate files with BBmap. $ reformat.sh in=reads.fq out1=reads_r1.fq out2=reads_r2.fq #interleave #fastq #seperate #reformat #bbmap
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra commented on a page titled BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries 2566 days ago

  One more intersting approach by Sonal Singhal @ https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra created a page BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries 2566 days ago

  BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains an exact repeat somewhere, reads mapping to it will...

  Comments

  • • Poonam Mahapatra@poonam

    

    Poonam Mahapatra 2566 days ago

    One more intersting approach by Sonal Singhal @ https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads
• • Jit@jit.aber

  

  Jit posted to the wire 2566 days ago

  Learn algorithms https://github.com/rushter/MLAlgorithms #Algorithms #Learn
• • BioStar@biostar

  

  BioStar posted to the wire 2566 days ago

  Filtration https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads
• • BioStar@biostar

  

  BioStar posted a new ad in the Opportunity Junior Research Fellow position at Translational Health Group, ICGEB, New Delhi 2566 days ago
• • BioStar@biostar

  

  BioStar is now a friend with biogeek 2566 days ago

  • BioStar@biostar

  

  • biogeek@biogeek

  
• • biogeek@biogeek

  

  biogeek is now a friend with BioStar 2566 days ago

  • biogeek@biogeek

  

  • BioStar@biostar

  
• • Jit@jit.aber

  

  Jit posted to the wire 2567 days ago

  Definition of homologous #synteny blocks http://science.sciencemag.org/content/sci/suppl/2005/07/20/309.5734.613.DC1/Murphy.SOM.pdf
• • Jitendra Narayan@admin

  

  Jitendra Narayan posted to the wire 2567 days ago

  BOL wish you a very happy new year. #BOL #BOLover #2018 #Wish
• • Jit@jit.aber

  

  Jit commented on a bookmark Venn Diagrams on R Studio 2569 days ago

  Six-way Venn diagram https://stackoverflow.com/questions/32440128/nice-looking-five-sets-venn-diagrams
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra bookmarked JPred4: A Protein Secondary Structure Prediction Server 2570 days ago

  JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure...

  http://www.compbio.dundee.ac.uk/jpred4/
• • Rahul Agarwal@raag

  

  Rahul Agarwal posted to the wire 2571 days ago

  https://biojs.net/ - A library of over hundred JavaScript components enabling you to visualize and process data using current web technologies #JS #Visualisation #OpenSource
• • Rahul Agarwal@raag

  

  Rahul Agarwal is now a friend with biogeek 2571 days ago

  • Rahul Agarwal@raag

  

  • biogeek@biogeek

  
• • biogeek@biogeek

  

  biogeek is now a friend with Rahul Agarwal 2571 days ago

  • biogeek@biogeek

  

  • Rahul Agarwal@raag

  
• • Jit@jit.aber

  

  Jit answered the question What are the difference between Synteny and Collinearity terms? 2571 days ago

  These terms are interchangeably used in genomics. The major difference between synteny and collinearity is that synteny is (genetics|of multiple genes) the condition of being located on the same chromosome or region of genome while collinearity...
• • Jit@jit.aber

  

  Jit bookmarked 3d-dna: 3D de novo assembly (3D DNA) pipeline 2571 days ago

  This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genomes reported in: Dudchenko et al., De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science, 2017. Unless otherwise...

  https://github.com/theaidenlab/3d-dna
• • Rahul Nayak@rahul

  

  Rahul Nayak posted a new ad in the ResearchLabs ShendureLab 2571 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak posted to the wire 2571 days ago

  Bioinformatics tools collection and database https://bio.tools #tools #database #search #list

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