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• • Neel@neelam

  

  Neel created a new bio-script Conda command to install checkV 871 days ago

  Comments

  • • Neel@neelam

    

    Neel 871 days ago

    More at https://bitbucket.org/berkeleylab/checkv/src/master/
• • Neel@neelam

  

  Neel commented on a bookmark CheckM:Assessing the quality of microbial genomes recovered from isolates, single cells, and... 871 days ago

  MOre at https://bitbucket.org/berkeleylab/checkv/src/master/
• • Neel@neelam

  

  Neel commented on a bookmark CheckM:Assessing the quality of microbial genomes recovered from isolates, single cells, and... 871 days ago

  CheckM for Metagenome https://linsalrob.github.io/ComputationalGenomicsManual/CheckM/
• • Jit@jit.aber

  

  Jit posted a new ad in the Opportunity Bioinformaticians in comparative and evolutionary genomics 878 days ago
• • Jit@jit.aber

  

  Jit bookmarked auN: a new metric to measure assembly contiguity 878 days ago

  Given a de novo assembly, we often measure the “average” contig length by N50. N50 is neither the real average nor median. It is the length of the contig such that this and longer contigs cover at least 50% of the assembly. A...

  https://lh3.github.io/2020/04/08/a-new-metric-on-assembly-contiguity
• • Neel@neelam

  

  Neel commented on the blog How to install Perl modules manually, using CPAN command, and other quick ways in the group Perl *PIPERs 881 days ago

  If you are on Ubuntu https://packages.ubuntu.com/bionic/bioperl sudo apt-get install <name_mentioned_in_list>
• • Jit@jit.aber

  

  Jit bookmarked Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome 884 days ago

  LOCUS ON563414 197205 bp DNA linear VRL 30-MAY-2022 DEFINITION Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome. ACCESSION ON563414 VERSION ON563414.3 KEYWORDS . SOURCE Monkeypox virus...

  https://www.ncbi.nlm.nih.gov/nuccore/ON563414
• • Jit@jit.aber

  

  Jit posted to the wire 893 days ago

  Linux command cheatsheet https://www.xmind.net/m/WwtB/#
• • Shruti Paniwala@shruti

  

  Shruti Paniwala published a blog post Understanding DUMP files from NCBI Taxonomy database ! 895 days ago

  Taxonomy database !
• • Neel@neelam

  

  Neel created a new bio-script Install Read Simulator 900 days ago
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted a new ad in the ResearchLabs lsugenomics Lab 903 days ago
• • Shruti Paniwala@shruti

  

  Shruti Paniwala published a blog post SLURM Commands 904 days ago

  commands
• • Shruti Paniwala@shruti

  

  Shruti Paniwala bookmarked Human Complete Genome 904 days ago

  Telomere-to-telomere consortium We have sequenced the CHM13hTERT human cell line with a number of technologies. Human genomic DNA was extracted from the cultured cell line. As the DNA is native, modified bases will be preserved. The data includes...

  https://www.science.org/doi/10.1126/science.abj6987
• • Jit@jit.aber

  

  Jit bookmarked htop explained 905 days ago

  For the longest time I did not know what everything meant in htop. I thought that load average 1.0 on my two core machine means that the CPU usage is at 50%. That's not quite right. And also, why does it say 1.0? I decided to look...

  https://peteris.rocks/blog/htop/
• • Shruti Paniwala@shruti

  

  Shruti Paniwala bookmarked JASMINE: Jointly Accurate Sv Merging with Intersample Network Edges 908 days ago

  This tool is used to merge structural variants (SVs) across samples. Each sample has a number of SV calls, consisting of position information (chromosome, start, end, length), type and strand information, and a number of other values. Jasmine...

  https://github.com/mkirsche/Jasmine
• • Jit@jit.aber

  

  Jit bookmarked InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams 911 days ago

  InteractiVenn, a more flexible tool for interacting with Venn diagrams including up to six sets. It offers a clean interface for Venn diagram construction and enables analysis of set unions while preserving the shape of the diagram. Set unions are...

  http://www.interactivenn.net/
• • Shruti Paniwala@shruti

  

  Shruti Paniwala published a blog post Finding a mimicry game for teaching on-line and mentioned general resources 912 days ago

  finding a mimicry game for teaching on-line and mentioned general resources
• • Shruti Paniwala@shruti

  

  Shruti Paniwala published a blog post Online resources on must-read papers in evolutionary biology, for a literature club 912 days ago

  online resources on must-read papers in evolutionary biology, for a literature club
• • Shruti Paniwala@shruti

  

  Shruti Paniwala published a blog post List of comparative genomics resources ! 912 days ago

  Comparative genomics links !
• • Shruti Paniwala@shruti

  

  Shruti Paniwala bookmarked ChEMBL 918 days ago

  ChEMBL is a manually curated database of bioactive molecules with drug-like properties. It brings together chemical, bioactivity and genomic data to aid the translation of genomic information into effective new drugs.

  https://www.ebi.ac.uk/chembl/

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