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- Jit@jit.aber
Jit commented on the blog Ten International Scholarships for Indian Biotechnology and Bioinformatics Students 1455 days ago

Useful books for Indian scholarships https://indiabioscience.org/media/articles/GRANTS-BOOK-FINALVer_09111.pdf
- BioStar@biostar
BioStar bookmarked MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data 1457 days ago

The algorithm presented herein, Mining Algorithm for GenetIc Controllers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of TFs and cofactors in gene bodies and flanking regions in gene lists without...

https://github.com/asroopra/MAGIC
- Neel@neelam
Neel bookmarked DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms 1458 days ago

DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms using data from a single locus (a multiple sequence aligned -MSA data), or from several loci (a Multiple-MSA data, such as formats generated by some...

http://www.ub.edu/dnasp/
- Neel@neelam
Neel bookmarked IRscope: an online program to visualize the junction sites of chloroplast genomes 1458 days ago

eMPRess, a software program for phylogenetic tree reconciliation under the duplication-transfer-loss model that systematically addresses the problems of choosing event costs and selecting representative solutions, enabling users to make more robust...

https://sites.google.com/g.hmc.edu/empress/home
- Neel@neelam
Neel bookmarked vsFilt: A tool to improve virtual screening by structural filtration of docking poses 1459 days ago

The vsFilt is the first open application for post-docking structural filtration, available as a web-server. The new tool is easy to use and configure to detect a wide range of interaction types that are known to be involved in molecular recognition,...

https://biokinet.belozersky.msu.ru/vsfilt
- Neel@neelam
Neel posted to the wire 1459 days ago

Bioinformatics scientist-D at ICMR lab India https://main.icmr.nic.in/sites/default/files/career_opportunity/ICMR_Advertisement_06112020.pdf #Scientist #ICMR
- BioStar@biostar
BioStar published a blog post 10 NGS services companies around the globe ! 1461 days ago

According to the research report published, the top companies in NGS Services Market have new service launches, acquisitions, collaborations, partnerships, and also have expansions taken place in the NGS services space.
- Jit@jit.aber
Jit posted a new ad in the ResearchLabs Blaxter Lab 1464 days ago
- Jit@jit.aber
Jit posted a new ad in the ResearchLabs Edanchin Lab 1464 days ago
- Jit@jit.aber
Jit published a news post Published a dataset of 363 genomes from approximately 92 percent of bird families 1464 days ago

A research team published a dataset of 363 genomes from approximately 92 percent of bird families and showed the significance of sampling dense organisms for biodiversity research.
- Jit@jit.aber
Jit published a news post Comparative Genomics Data Set Including 240 Mammals Released ! 1464 days ago

The genome of 130 mammals was sequenced by a large international consortium and the data was analyzed together with 110 existing genomes to allow scientists to identify the important positions in the DNA.
- Jit@jit.aber
Jit bookmarked Updated science-wide author databases of standardized citation indicators 1468 days ago

There was great interest in the databases of standardized citation metrics across all scientists and scientific disciplines [1], and many scientists urged us to provide updates of the databases. Accordingly, we have provided updated analyses that...

https://journals.plos.org/plosbiology/article?id=10.1371%2Fjournal.pbio.3000918
- Jit@jit.aber
Jit published a news post BLAST+ 2.11.0 release is now available on FTP site ! 1469 days ago

The main advance is the ability to provide usage reports to NCBI to help us improve BLAST.
- Shruti Paniwala@shruti
Shruti Paniwala commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 1471 days ago

IEEE Transactions on Knowledge and Data Engineering accepts bioinformatics and algorithms manuscripts https://www.computer.org/csdl/journal/tk
- Shruti Paniwala@shruti
Shruti Paniwala bookmarked CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R 1472 days ago

CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimplements the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast and covers all necessary steps from sequence similarity searches, codon alignments to Ka/Ks...

https://gitlab.gwdg.de/mpievolbio-it/crbhits
- Jit@jit.aber
Jit bookmarked DADA2: Fast and accurate sample inference from amplicon data with single-nucleotide resolution 1473 days ago

The DADA2 tutorial goes through a typical workflow for paired end Illumina Miseq data: raw amplicon sequencing data is processed into the table of exact amplicon sequence variants (ASVs) present in each sample. The DADA2...

https://benjjneb.github.io/dada2/index.html
- Shruti Paniwala@shruti
Shruti Paniwala posted a new ad in the Opportunity ICMR Scientist Jobs For Biotech/Life Science/Biology & Bioinformatics 1473 days ago
- Shruti Paniwala@shruti
Shruti Paniwala published a news post Ramalingaswami Re-entry Fellowship 1473 days ago

Ramalingaswami Re-entry #Fellowship 2020-2021 for Indian Nationals
- Shruti Paniwala@shruti
Shruti Paniwala bookmarked FQC Dashboard: Integrates FastQC results into a web-based, interactive, and extensible FASTQ... 1474 days ago

FQC is software that facilitates quality control of FASTQ files by carrying out a QC protocol using FastQC, parsing results, and aggregating quality metrics into an interactive dashboard designed to richly summarize individual sequencing runs. The...

https://github.com/pnnl/fqc
- Shruti Paniwala@shruti
Shruti Paniwala posted a new ad in the Opportunity ICGEB Bioinformatics Vacancy ! 1474 days ago

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