BOL

Latest activity

• • BioStar@biostar

  

  BioStar bookmarked shovill: Assemble bacterial isolate genomes from Illumina paired-end reads 1420 days ago

  Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take...

  https://github.com/tseemann/shovill
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted a new ad in the Opportunity MedGenome is looking for Genome Analysts 1421 days ago
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 1421 days ago

  Happy new year 2021 ! #2021 #BOL
• • Shruti Paniwala@shruti

  

  Shruti Paniwala commented on the blog Letter of motivation for bioinformatics applicants ! 1421 days ago

  Any Motivation Letter should consist of a short intro defining the program you would like to get. First, state a clear objective of your future task and the reasons for picking this individual Ph.D. program. Provide the info...
• • Jit@jit.aber

  

  Jit commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 1423 days ago

  Journal of Integrative Bioinformatics https://www.degruyter.com/view/journals/jib/jib-overview.xml?tab_body=overview  
• • Jit@jit.aber

  

  Jit commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 1423 days ago

  Bioinformatics jobs at https://jobs.acm.org/jobs/results/keyword/Bioinformatics?radius=
• • Jit@jit.aber

  

  Jit bookmarked Galaxy Training Resources ! 1426 days ago

  Welcome to Galaxy Training! Collection of tutorials developed and maintained by the worldwide Galaxy community TopicTutorials Introduction to Galaxy Analyses 10 Assembly 6 Climate 3 Computational...

  https://training.galaxyproject.org/training-material/
• • Jit@jit.aber

  

  Jit bookmarked Genome assembly training tutorial at Galaxy ! 1426 days ago

  In this tutorial we assemble and annotate the genome of E. coli strain C-1. This strain is routinely used in experimental evolution studies involving bacteriophages. For instance, now classic works by Holly Wichman and Jim Bull (Bull 1997, Bull...

  https://training.galaxyproject.org/training-material/topics/assembly/tutorials/unicycler-assembly/tutorial.html

  Comments

  • • Neel@neelam

    

    Neel 1154 days ago

    Understandinng genome assembly processes https://academic.oup.com/bfg/article/15/1/1/1741842
• • Shruti Paniwala@shruti

  

  Shruti Paniwala bookmarked EUKulele: Taxonomic annotation of the unsung eukaryotic microbes 1427 days ago

   EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting...

  https://github.com/AlexanderLabWHOI/EUKulele
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted a new ad in the Opportunity Bioinformatics Scientist – ICMR Computational Genomics Centre 1427 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak is now a friend with Shruti Paniwala 1427 days ago

  • Rahul Nayak@rahul

  

  • Shruti Paniwala@shruti

  
• • Shruti Paniwala@shruti

  

  Shruti Paniwala is now a friend with Rahul Nayak 1427 days ago

  • Shruti Paniwala@shruti

  

  • Rahul Nayak@rahul

  
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked FastProNGS: fast preprocessing of next-generation sequencing reads 1427 days ago

  FastProNGS to integrate the quality control process with automatic adapter removal. Parallel processing was implemented to speed up the process by allocating multiple threads. Compared with similar up-to-date preprocessing tools, FastProNGS is by...

  https://github.com/Megagenomics/FastProNGS
• • Rahul Nayak@rahul

  

  Rahul Nayak answered the question How HiFi Reads Different from Traditional PacBio Long Reads ? 1427 days ago

  By calling consensus from subbreads produced by multiple passes of the enzyme around a circularized template, HiFi reads are generated. This results in both lengthy and effective HiFi reads. In comparison, traditional PacBio long reads are created...
• • Shruti Paniwala@shruti

  

  Shruti Paniwala asked How HiFi Reads Different from Traditional PacBio Long Reads ? 1427 days ago

  Trying to understand HiFi reads, any link could help ...
• • Jit@jit.aber

  

  Jit commented on the blog List of genome announcement, notes and reporting journals 1427 days ago

  Computational and Structural Biotechnology Journal for bioinformatics tool publication
• • Jit@jit.aber

  

  Jit bookmarked Hifiasm: a haplotype-resolved assembler for accurate Hifi reads 1429 days ago

  Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can assemble a human genome in several hours and works with the California redwood genome, one of the most complex genomes sequenced so far. Hifiasm can produce...

  https://github.com/chhylp123/hifiasm
• • Neel@neelam

  

  Neel commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 1429 days ago

  Bioinformatics jobs at https://www.invitae.com/en/careers/search
• • Neel@neelam

  

  Neel bookmarked maftools : Summarize, Analyze and Visualize MAF Files 1430 days ago

  With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer Genome Atlas Project has sequenced over 30 different cancers with sample size of...

  https://www.bioconductor.org/packages/release/bioc/vignettes/maftools/inst/doc/maftools.html
• • Shruti Paniwala@shruti

  

  Shruti Paniwala published a news post The new corona variant has 23 mutations in all, which is unusually huge ! 1430 days ago

  The new SARS-CoV-2 version, B.1.1.7, which was first seen in the third week of September in Kent and Greater London, has since spread to other locations in the UK.

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