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• • Shruti Paniwala@shruti

  

  Shruti Paniwala bookmarked Applied Computational Genomics Course at UU: Spring 2020 1430 days ago

  This course will provide a comprehensive introduction to fundamental concepts and experimental approaches in the analysis and interpretation of experimental genomics data. It will be structured as a series of lectures covering key concepts and...

  https://github.com/quinlan-lab/applied-computational-genomics
• • Jitendra Narayan@admin

  

  Jitendra Narayan is now a friend with Prajnya 1431 days ago

  • Jitendra Narayan@admin

  

  • Prajnya@prajnyam

  
• • Prajnya@prajnyam

  

  Prajnya is now a friend with Jitendra Narayan 1431 days ago

  • Prajnya@prajnyam

  

  • Jitendra Narayan@admin

  
• • Jit@jit.aber

  

  Jit posted to the wire 1432 days ago

  Easily visualise regions of your GFF file https://fmalmeida.github.io/posts/plot-dna-features-tutorial/ #GFF #Visualize
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked GEO2R: compare two or more groups of Samples 1433 days ago

  GEO2R to compare two or more groups of Samples in order to identify genes that are differentially expressed across experimental conditions.

  https://www.ncbi.nlm.nih.gov/geo/geo2r/
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks 1433 days ago

  With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page...

  https://amp.pharm.mssm.edu/biojupies/
• • Neel@neelam

  

  Neel posted a new ad in the Opportunity Scientist-B (Bioinformatics) at AIIMS, Delhi 1433 days ago
• • Neel@neelam

  

  Neel bookmarked SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs 1434 days ago

  The first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. SneakySnake greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short...

  https://github.com/CMU-SAFARI/SneakySnake
• • Neel@neelam

  

  Neel bookmarked Liftoff: An accurate GFF3/GTF lift over pipeline 1434 days ago

  Liftoff is a tool that accurately maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require a pre-generated “chain” file as input, Liftoff is a...

  https://github.com/agshumate/Liftoff
• • Neel@neelam

  

  Neel bookmarked COVID Moonshot: An international effort to DISCOVER A COVID ANTIVIRAL 1434 days ago

  The COVID Moonshot is an ambitious crowdsourced initiative to accelerate the development of a COVID antiviral. We work in the open with no intellectual property constraints. This way, any scientist can view submitted drug designs and experimental...

  https://covid.postera.ai/covid
• • Jit@jit.aber

  

  Jit created a new bio-script Install SibeliaZ in your Linux cluster ! 1434 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked Caretta – A multiple protein structure alignment and feature extraction suite 1436 days ago

  Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments...

  http://www.bioinformatics.nl/caretta/
• • Neel@neelam

  

  Neel commented on the blog How to install Perl modules manually, using CPAN command, and other quick ways in the group Perl *PIPERs 1436 days ago

  Check the perl module  Test if dependencies are met by running this perl one-liner: perl -e "use JSON::XS;"
• • Neel@neelam

  

  Neel posted a new ad in the Opportunity Two postdoc positions to study multiscale genome evolution and cephalopod gene regulation... 1436 days ago
• • Jit@jit.aber

  

  Jit answered the question How does MCScanX classify ? 1441 days ago

  MCScanX classify genes into five categories 1. singletons: genes without any duplicate 2. dispersed: duplicates occurring more than 10 genes apart or on different scaffolds 3. proximal: duplicates occurring on the same scaffold at most 10 genes...
• • Radha Agarkar@radhaagarkar

  

  Radha Agarkar asked How does MCScanX classify ? 1441 days ago

  MCScanX classify genes into five categories, singletons, dispersed, proximal, tandem, and segmental. I am wondering the details definition of these ...
• • LEGE@lege

  

  LEGE posted a new ad in the Opportunity Postdoc in comparative genomics 1445 days ago
• • LEGE@lege

  

  LEGE commented on the blog Tools to detect synteny blocks regions among multiple genomes 1446 days ago

  halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments https://pubmed.ncbi.nlm.nih.gov/32463100/
• • Neel@neelam

  

  Neel published a news post NCBI BLAST have added new columns to the Descriptions 1452 days ago

  NCBI BLAST have added new columns to the Descriptions Table for web BLAST output.
• • Jit@jit.aber

  

  Jit commented on the blog Ten International Scholarships for Indian Biotechnology and Bioinformatics Students 1455 days ago

  Funding opportunities for PhD and postdocs in India https://indiabioscience.org/media/articles/GRANTS-BOOK-FINALVer_09111.pdf

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