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• • BioStar@biostar

  

  BioStar bookmarked 3D Genome Browser: explore chromatin interaction data, such as Hi-C, ChIA-PET, Capture Hi-C,... 1400 days ago

  Beside visualizing chromatin interaction data, you can also seamlessly browse other omics data such as ChIP-Seq or RNA-Seq for the same genomic region, and gain a complete view of both regulatory landscape and 3D genome structure for any given gene....

  http://3dgenome.fsm.northwestern.edu/index.html
• • Jit@jit.aber

  

  Jit posted to the wire 1400 days ago

  sort the string which combined with string + numeric using bash script. $ sort -V #Sort #sort #number #string
• • Neel@neelam

  

  Neel created a new bio-script Command to create conda environment ! 1401 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak posted to the wire 1401 days ago

  mixtureS readme file at http://www.cs.ucf.edu/~xiaoman/mixtureS/README_linux.pdf #mixtureS #Tool
• • Jit@jit.aber

  

  Jit posted to the wire 1401 days ago

  Building #conda #packages from scratch https://docs.conda.io/projects/conda-build/en/latest/user-guide/tutorials/build-pkgs.html
• • Manisha Mishra@manisha

  

  Manisha Mishra bookmarked Pandoc: The universal markup converter 1404 days ago

  Pandoc is a Haskell library for converting from one markup format to another, and a command-line tool that uses this library. Pandoc is a free and open-source document converter, widely used as a writing tool and as a basis for...

  https://github.com/jgm/pandoc
• • Manisha Mishra@manisha

  

  Manisha Mishra bookmarked MMseqs2: ultra fast and sensitive sequence search and clustering suite 1404 days ago

  MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta version, via cygwin)...

  https://github.com/soedinglab/MMseqs2
• • Jit@jit.aber

  

  Jit created a new bio-script Install and set up i-adhore for synteny and wgd analysis ! -- step by step -- 1405 days ago
• • BioStar@biostar

  

  BioStar created a new bio-script Set up WGD environment using conda ! 1405 days ago
• • Jit@jit.aber

  

  Jit created a new bio-script Install gffread using Conda ! 1405 days ago
• • BioStar@biostar

  

  BioStar published a blog post Protocol for De novo Genome Assembly using Illumina Reads 1406 days ago

  In this protocol, we address and describe the de novo assembly method for small to medium-sized genomes.
• • Jit@jit.aber

  

  Jit commented on the blog chromoMap-An R package for Interactive visualization and mapping of human chromosomes 1406 days ago

  Detail documentation is available at https://lakshay-anand.github.io/chromoMap/docs.html
• • Jit@jit.aber

  

  Jit posted to the wire 1406 days ago

  Install Kraken full database. $ kraken2-build --standard -db /media/urbe/MyADrive/tmp_JitDB/
• • BioStar@biostar

  

  BioStar published a news post SPADes team announce new version SPADes v3.15 1407 days ago

  New SPAdes 3.15.0.0. announced by the SPADes team
• • Jit@jit.aber

  

  Jit bookmarked BUSCO datasets ! 1409 days ago

  The BUSCO software now directly downloads the necessary datasets, specified by the user or automatically selected. To display all available datasets busco --list-datasets You can also download them manually and see...

  https://busco-data.ezlab.org/v4/data/lineages/
• • Jit@jit.aber

  

  Jit bookmarked MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic... 1409 days ago

  MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs. Metaeuk combines the fast and sensitive homology search capabilities of MMseqs2 with a dynamic programming procedure to...

  https://github.com/soedinglab/metaeuk
• • Jit@jit.aber

  

  Jit created a new bio-script Install wgd cli on linux ! 1409 days ago
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 1409 days ago

  Understanding mutiple alignment format http://www.bx.psu.edu/~dcking/man/maf.xhtml #MSA #Format #Alignment
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 1409 days ago

  Understanding Natural Selection dN_dS https://www.youtube.com/watch?v=vwmuvcDh9ZM&pbjreload=101 #dN_dS
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 1409 days ago

  I heard some bad updates of scamming from BioCode ... https://www.biocode.ltd/internship #Care #Scam

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