REGEN infers evolutionary events, including gene creation and deletion and replicon fission and fusion. The reconstruction can be performed by either a maximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the...
NanoComp: comparing multiple runs
NanoStat: statistic summary report of reads or alignments
NanoFilt: filtering and trimming of reads
NanoLyse: removing contaminant reads (e.g. lambda control DNA) from fastq
Python is a general-purpose language, which means it can be used to build just about anything, which will be made easy with the right tools/libraries.
Professionally, Python is great for backend web development, data analysis, artificial...
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-celled eukaryotes, but a number of factors combine to make it far rarer in...
scikit-bio is currently in beta. We are very actively developing it, and backward-incompatible interface changes can and will arise. To avoid these types of changes being a surprise to our users, our public APIs are decorated to make it clear...
IAB is primarily being developed by Greg Caporaso(GitHub/Twitter: @gregcaporaso) in the Caporaso Lab at Northern Arizona University. You can find information on the courses I teach on my teaching website and...