BOL: All Site Activity

All Site Activity

- Jit@jit.aber
Jit bookmarked ECTOOLS: Long Read Correction and other Correction tools 2516 days ago

Long Read Correction and other Correction tools This package is a loose collection of scripts. To run the correctionroutine see the section below. Descriptions of the other scriptsare at the bottom of this file. Contact: gurtowsk@cshl.edu In...

https://github.com/jgurtowski/ectools
- Jit@jit.aber
Jit bookmarked Jabba: Hybrid Error Correction for Long Sequencing Reads 2516 days ago

Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation (Illumina) data. Input Jabba takes as input a concatenated de Bruijn graph and a set of sequences: the de Bruijn graph...

https://github.com/biointec/jabba
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2517 days ago

PhD call for bio‐omic sciences Deadline 15 March 2018 : ls-phd.ceitec.cz/ #Phd #Czech #StructuralBiology #Omics
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2517 days ago

Nice Short Review-Disease Biomarkers for Precision Medicine: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5414969/ #Omics #Cancer #PrecisionMedice
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2517 days ago

Network-guided GWAS Analysis-http://giant.princeton.edu/gwas/create_new #GWAS #Phenotype #Genetics #Disease
- Jit@jit.aber
Jit created a new bio-script Insert the sequence at desire location in multi-fasta file with Perl 2518 days ago
- Jit@jit.aber
Jit bookmarked Seal: SEquence ALignment evaluation suite 2518 days ago

Seal is a comprehensive sequencing simulation and alignment tool evaluation suite. This software (implemented in Java) provides several utilities that can be used to evaluate alignment algorithms, including: Reading a pre-existing reference...

http://compbio.case.edu/seal/
- Poonam Mahapatra@poonam
Poonam Mahapatra posted to the wire 2518 days ago

Convert interleaved to separate files with BBmap. $ reformat.sh in=reads.fq out1=reads_r1.fq out2=reads_r2.fq #interleave #fastq #seperate #reformat #bbmap
- Poonam Mahapatra@poonam
Poonam Mahapatra commented on a page titled BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries 2518 days ago

One more intersting approach by Sonal Singhal @ https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads
- Poonam Mahapatra@poonam
Poonam Mahapatra created a page BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries 2518 days ago

BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains an exact repeat somewhere, reads mapping to it will...
Comments
- Poonam Mahapatra@poonam
  
  Poonam Mahapatra 2518 days ago
  One more intersting approach by Sonal Singhal @ https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads
- Jit@jit.aber
Jit posted to the wire 2518 days ago

Learn algorithms https://github.com/rushter/MLAlgorithms #Algorithms #Learn
- BioStar@biostar
BioStar posted to the wire 2518 days ago

Filtration https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads
- BioStar@biostar
BioStar posted a new ad in the Opportunity Junior Research Fellow position at Translational Health Group, ICGEB, New Delhi 2518 days ago
- BioStar@biostar
BioStar is now a friend with biogeek 2518 days ago
BioStar@biostar
biogeek@biogeek
- biogeek@biogeek
biogeek is now a friend with BioStar 2518 days ago
biogeek@biogeek
BioStar@biostar
- Jit@jit.aber
Jit posted to the wire 2519 days ago

Definition of homologous #synteny blocks http://science.sciencemag.org/content/sci/suppl/2005/07/20/309.5734.613.DC1/Murphy.SOM.pdf
- Jitendra Narayan@admin
Jitendra Narayan posted to the wire 2520 days ago

BOL wish you a very happy new year. #BOL #BOLover #2018 #Wish
- Jit@jit.aber
Jit commented on a bookmark Venn Diagrams on R Studio 2521 days ago

Six-way Venn diagram https://stackoverflow.com/questions/32440128/nice-looking-five-sets-venn-diagrams
- Poonam Mahapatra@poonam
Poonam Mahapatra bookmarked JPred4: A Protein Secondary Structure Prediction Server 2522 days ago

JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure...

http://www.compbio.dundee.ac.uk/jpred4/
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2523 days ago

https://biojs.net/ - A library of over hundred JavaScript components enabling you to visualize and process data using current web technologies #JS #Visualisation #OpenSource

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