BOL

BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains an exact repeat somewhere, reads mapping to it will...

Learn algorithms https://github.com/rushter/MLAlgorithms #Algorithms #Learn

Filtration https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads

Definition of homologous #synteny blocks http://science.sciencemag.org/content/sci/suppl/2005/07/20/309.5734.613.DC1/Murphy.SOM.pdf

BOL wish you a very happy new year. #BOL #BOLover #2018 #Wish

Six-way Venn diagram https://stackoverflow.com/questions/32440128/nice-looking-five-sets-venn-diagrams

JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure...

https://biojs.net/ - A library of over hundred JavaScript components enabling you to visualize and process data using current web technologies #JS #Visualisation #OpenSource

These terms are interchangeably used in genomics. The major difference between synteny and collinearity is that synteny is (genetics|of multiple genes) the condition of being located on the same chromosome or region of genome while collinearity...

This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genomes reported in: Dudchenko et al., De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science, 2017. Unless otherwise...

Bioinformatics tools collection and database https://bio.tools #tools #database #search #list

Ultimate tool for resolving repeats in genome assemblies. Though the specific implementation of the idea of the rectangle graph approach is already included into the current SPAdes distribution, we're also releasing the Rectangle Graph Module...

I sometime got confused with Synteny and Collinearity terminology. I am still wondering about the major differences.

CAMSA – is a tool for Comparative Analysis and Merging of Scaffold Assemblies, distributed both as a standalone software package and as Python library under the MIT license. Main features: works with any number of...