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Abhi on LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data (169 days ago): Detail paper here https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8111061/- BioStar on Perl Module Installation (626 days ago): To install BioPerl on a macOS system, you can follow these steps: Open the...
- Abhi on CovCal: Coverage / Read Count Calculator (787 days ago): Sequencing coverage is defined as the average number of reads that covers...
- Neel on CheckM:Assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes (839 days ago): MOre at https://bitbucket.org/berkeleylab/checkv/src/master/
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Enzyme Portal
By Rahul Agarwal 4100 days agowww.ebi.ac.uk - Enzyme Portal- To look for information about the biology of a protein with enzymatic activity. The enzyme portal integrates many resources, most of them hosted by EBI and also external ones such as BioPortal. Its main goal is to provide...Latest paper on comparison of mapping tools
By Rahul Agarwal 4100 days ago Comments (1)www.biomedcentral.com - A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):184, 2013. http://bmi.osu.edu/hpc/software/benchmark/ http://bmi.osu.edu/hpc/software/pmap/pmap.html Other similiar...Bioinformatics course and lectures
By Rahul Agarwal 4100 days agogtpb.igc.gulbenkian.pt - http://openwetware.org/wiki/User:Jarle_Pahr/BioinformaticsShould you get sequenced? Not all bad genes predict disease
By Rahul Agarwal 4105 days agowww.today.com - “What we really don’t know yet is whether the predictive aspects of the genome are going to turn out to be beneficial or potentially harmful” “As we roll out genomic medicine we are fighting against this society-wide...Sequencing Solutions to World Health
By Rahul Agarwal 4105 days agowww.lifetechnologies.com - "New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologiesBioinformatics Algorithm Demonstrations and Tutorials
By Jitendra Narayan 4105 days ago Comments (60)www.cybertory.org - Abstract This project presents demonstrations of selected computer science algorithms important in bioinformatics, implemented in the spreadsheet program Microsoft Excel. Spreadsheets provide an interesting platform for demonstration of...Java and BioJava Tutorial links
By Jitendra Narayan 4107 days ago Comments (1)biojava.org - BioJava provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of this bookmark is to provide useful links for bioinformatician. Please add more useful Java...Perl and BioPerl Tutorials
By Jitendra Narayan 4107 days ago Comments (27)cbb.sjtu.edu.cn - This bookmark is created to store the useful Perl and BioPerl tutorial links at one place. Feel free to share and add more useful tutorial links here ....Ruby and BioRuby Tutorials
By Jitendra Narayan 4108 days ago Comments (4)www.codeschool.com - Collections of Ruby and BioRuby learning materials. BioRuby paper link : http://bioinformatics.oxfordjournals.org/content/26/20/2617.abstractPrecision Medicine
By Rahul Agarwal 4110 days agowww.cbsnews.com - Coupling established clinical–pathological indexes with state-of-the-art molecular profiling to create diagnostic, prognostic, and therapeutic strategies precisely tailored to each patient's requirements — hence the term “Precision...
