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Abhi on LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data (169 days ago): Detail paper here https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8111061/- BioStar on Perl Module Installation (626 days ago): To install BioPerl on a macOS system, you can follow these steps: Open the...
- Abhi on CovCal: Coverage / Read Count Calculator (786 days ago): Sequencing coverage is defined as the average number of reads that covers...
- Neel on CheckM:Assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes (839 days ago): MOre at https://bitbucket.org/berkeleylab/checkv/src/master/
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Rosalind Bioinformatics problems !!!
By Abhi 3629 days agorosalind.info - Rosalind is a platform for learning bioinformatics and programming through problem solving. Take a tour to get the hang of how Rosalind works. http://rosalind.info/problems/list-view/Google Genomics
By Reshma Khatun 3692 days agocloud.google.com - Google Genomics provides an API to store, process, explore, and share DNA sequence reads, reference-based alignments, and variant calls, using Google's cloud infrastructure. Store alignments and variant calls for one genome or a million. Process...Junk part of the human genome unlocked
By Rahul Agarwal 3699 days agowww.sciencedaily.com - More: Texas A&M Biologists Unlock Non-Coding Half of Human Genome with Novel DNA Sequencing Technique http://www.science.tamu.edu/news/story.php?story_ID=1282#.VDbBQ_mSyyA "this study stated that differences in the heterochromatin exist ; the...7th International Conference on Bioinformatics and Computational Biology (BICoB)
By Rahul Agarwal 3702 days agowww.cs.umb.edu - In recent years, computational biology and medical informatics have seen significant advances driven by computational techniques in bioinformatics making bioinformatics and computational biology among the most vibrant research areas. The 7th...Orange-Bioinformatics 2.5.34
By Robert M Willioms 3702 days agopypi.python.org - Orange Bioinformatics extends Orange, a data mining software package, with common functionality for bioinformatics. The provided functionality can be accessed as a Python library or through a visual programming interface (Orange Canvas). The latter...Software developed in pevsner lab
By Robert M Willioms 3702 days agopevsnerlab.kennedykrieger.org - DRAGON: Database Referencing of Array Genes Online SNOMAD: Standardization and Normalization of Microarray Data SNPduo: SNP Analysis Between Two Individuals SNPtrio: Analyzing and Visualizing and Inheritance Patterns in Trios SNPscan: Data...International Conference on Bioinformatics Models, Methods and Algorithms
By Rahul Agarwal 3703 days agowww.bioinformatics.biostec.org - The purpose of the International Conference on Bioinformatics Models, Methods and Algorithms is to bring together researchers and practitioners interested in the application of computational systems and information technologies to the field of...Arvados
By Martin Jones 3718 days agohttps://arvados.org/ - Arvados is a free and open source bioinformatics platform for genomic and biomedical data. User can Store | Organize | Compute | Share the data for free.Java utilities for Next Generation Sequencing by Pierre Lindenbaum
By Robert M Willioms 3723 days agogithub.com - Java utilities for Bioinformatics https://github.com/lindenb/jvarkitSwabs to Genomes: A Comprehensive Workflow
By Rahul Nayak 3760 days agopeerj.com - The sequencing, assembly, and basic analysis of microbial genomes, once a painstaking and expensive undertaking, has become almost trivial for research labs with access to standard molecular biology and computational tools. However, there are a wide...
