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Group activity

- Abhimanyu Singh@abhimanyu
Abhimanyu Singh bookmarked Next generation sequencing(NGS) books 3859 days ago

Employing different technologies, the purpose of NGS platform is to decode the identity or modification on the nucleotides. NGS platforms evolve quickly and capture the main stream. This bookmark is created to provide NGS online books links.

http://en.wikibooks.org/wiki/Next_Generation_Sequencing_%28NGS%29/Print_version
Comments
- Jit@jit.aber
  
  Jit 3785 days ago
  Few next generation sequencing resources at http://www.nature.com/subjects/next-generation-sequencing
  This illumina http://res.illumina.com/documents/products/illumina_sequencing_introduction.pdf intro is good for beginners.
- Rahul Agarwal@raag
Rahul Agarwal replied on the discussion topic Does anyone have Nanopore latest updates? 3863 days ago

Another Nanopore sequencing based startup come into market: Quantapore Inc., Address: 1455 Adams Drive, Suite 1081, Menlo Park, CA...
- Alok Prajapati@Alok
Alok Prajapati commented on a bookmark Next Generation Sequencing (NGS) Tutorials 3868 days ago

NGS tutorial for novice http://www.uni-mainz.de/FB/Biologie/Anthropologie/487_ENG_HTML.php
- Radha Agarkar@radhaagarkar
Radha Agarkar commented on a bookmark Next Generation Sequencing (NGS) Tutorials 3877 days ago

NGS tutorial at http://www.bioinformatics.auckland.ac.nz/workshops/NGS-workshop-update.pdf
- santosh pal@santoshpal
santosh pal commented on a bookmark Next Generation Sequencing (NGS) Tutorials 3879 days ago

Bioinformatics algorithms at www.users-birc.au.dk/cstorm/students/Vesterstroem_Mar2006.pdf www.proteomics.bioengr.uic.edu/people/ezra/cv/thesis_uic.pdf
- Rahul Agarwal@raag
Rahul Agarwal bookmarked New RNA Seq tool 3894 days ago

"By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool...

http://www.genengnews.com/gen-news-highlights/lightweight-algorithms-sail-through-rna-sequencing-data/81249765/
Comments
- Poonam Mahapatra@poonam
  
  Poonam Mahapatra 3819 days ago
  GenePattern offers a set of tools to support a wide variety of RNA-seq analyses, including short-read mapping, identification of splice junctions, transcript and isoform detection, quantitation, differential expression, quality control metrics, visualization, and file utilities. http://www.broadinstitute.org/cancer/software/genepattern/modules/RNA-seq
- Jitendra Narayan@admin
  
  Jitendra Narayan 3819 days ago
  RNA-Seq: a revolutionary tool for transcriptomics http://www.nature.com/nrg/journal/v10/n1/abs/nrg2484.html
- Rahul Agarwal@raag
  
  Rahul Agarwal 3819 days ago
  OmiRas, a web server (from GenXPro Frankfurt) for the annotation, comparison and visualization of interaction networks of non-coding RNAs derived from small RNA-Sequencing experiments of two different conditions.
  http://tools.genxpro.net/omiras
+1 more
- Neel@neelam
Neel replied on the discussion topic Does anyone have Nanopore latest updates? 3900 days ago

Results from Oxford Nanopore's MinION are promising, but fall short of high expectations. Find more at nature news http://www.nature.com/news/data-from-pocket-sized-genome-sequencer-unveiled-1.14724
- Jitendra Narayan@admin
Jitendra Narayan commented on a bookmark Next Generation Sequencing (NGS) Tutorials 3917 days ago

http://omictools.com/ an useful tools for omics data analysis ...
- Jitendra Narayan@admin
Jitendra Narayan commented on a bookmark Next Generation Sequencing (NGS) Tutorials 3935 days ago

NGSUtils is a suite of software tools for working with next-generation sequencing datasets. Links http://ngsutils.org/
- Jitendra Narayan@admin
Jitendra Narayan commented on a bookmark Next Generation Sequencing (NGS) Tutorials 3935 days ago

Educational resources and tutorials on NGS can also be found at following websites: https://www.vlsci.org.au/educational_resources_genomics http://ged.msu.edu/angus/tutorials-2013/
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary replied on the discussion topic Does anyone have Nanopore latest updates? 3952 days ago

Recently data from pocket-sized genome sequencer unveiled. Results from Oxford Nanopore's MinION are promising, but fall short of high expectations http://www.nature.com/news/data-from-pocket-sized-genome-sequencer-unveiled-1.14724
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary commented on a bookmark Next Generation Sequencing (NGS) Tutorials 3952 days ago

NGS tutorial http://lpm.hms.harvard.edu/palaver/sites/default/files/11_02_28_Dennis_Wall_1.pdf
- Madhvan Reddy@madhvan
Madhvan Reddy published a news post The genome factory !!! 3993 days ago

World’s first $1,000 genome enables ‘factory’ scale sequencing for population and disease studies
- Rahul Nayak@rahul
Rahul Nayak created a page Useful Publications and Websites for Deep Sequencing Data Analysis 4010 days ago

Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant to animal and microbial systems] Sense from sequence reads: methods for...
- Aaryan Lokwani@aaryan
Aaryan Lokwani commented on a bookmark Next Generation Sequencing (NGS) Tutorials 4036 days ago

Next-Generation Sequencing Workshop Materials http://www.broadinstitute.org/science/programs/medical-and-population-genetics/next-generation-sequencing-workshop-materials
- Jit@jit.aber
Jit commented on a bookmark Latest paper on comparison of mapping tools 4039 days ago

The recent revolution in sequencing technologies has led to an exponential growth of sequence data. To tackle this ‘data deluge’, here Lawrence Berkeley National Laboratory introduce the BioPig sequence analysis toolkit as one of...
- Madhvan Reddy@madhvan
Madhvan Reddy commented on a page titled Genome Browsers 4040 days ago

Thanks for the list of good genome browsers. But if someone is looking to do some sort of coding/programming stuff and implement/add in any pipeline then GBrowse is there for the rescue. GBrowse is a combination of database and...
- Kamalakshi Mukherjee@kamalakshi
Kamalakshi Mukherjee commented on a bookmark Next Generation Sequencing (NGS) Tutorials 4042 days ago

A survey of tools for variant analysis of next-generation genome sequencing data http://bib.oxfordjournals.org/content/early/2013/01/21/bib.bbs086.full
- Jitendra Narayan@admin
Jitendra Narayan replied on the discussion topic Does anyone have Nanopore latest updates? 4044 days ago

Hi Nanopore enthusiast, For those interested in doing DNA sequencing via your USB port: it is possible to get early access to the Oxford Nanopore MinION system, they now appear to be taking applications. See here for more...
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary commented on a page titled Genome Browsers 4049 days ago

UTGB (University of Tokyo Genome Browser) Toolkit is an open-source software for developing personalized genome browsers that work in web browsers. http://utgenome.org/

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Next Generation Sequencing (NGS)

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Group activity

OmiRas, a web server (from GenXPro Frankfurt) for the annotation, comparison and visualization of interaction networks of non-coding RNAs derived from small RNA-Sequencing experiments of two different conditions.