Jit
Enthusiast computational biologist with business dream !!!
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HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
By Rahul Nayak 2393 days agogithub.com - HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome). Based on an extension of BWT for...Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
By Poonam Mahapatra 2368 days agomolevol.cmima.csic.es - Gblocks eliminates poorly aligned positions and divergent regions of a DNA or protein alignment so that it becomes more suitable for phylogenetic analysis. This server implements the most important features of the Gblocks program to make its...Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
By Jit 2285 days agowww.ncbi.nlm.nih.gov - Mulan: Multiple-sequence local alignment and visualization for studying function and evolution Mulan (http://mulan.dcode.org/), a novel method and a network server for comparing multiple draft and finished-quality sequences to identify functional...MSAProbs - Parallel and accurate multiple sequence alignment
By Neel 1965 days agomsaprobs.sourceforge.net - MSAProbs is a well-established state-of-the-art multiple sequence alignment algorithm for protein sequences. The design of MSAProbs is based on a combination of pair hidden Markov models and partition functions to calculate posterior...VG: variation graph data structures, interchange formats, alignment, genotyping, and variant...
By Jit 1763 days agogithub.com - Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of: nodes, which are labeled by sequences and ids edges, which connect two nodes via either of...UniAligner: a parameter-free framework for fast sequence alignment
By Abhi 261 days agogithub.com - UniAligner (formerly, TandemAligner) is the first parameter-free algorithm for sequence alignment that introduces a sequence-dependent alignment scoring that automatically changes for any pair of compared sequences. Classical alignment approaches,...JSON
By Abhimanyu Singh 2792 days agohttp://json.org/ - JSON (JavaScript Object Notation) is a lightweight data-interchange format. It is easy for humans to read and write. It is easy for machines to parse and generate. It is based on a subset of the JavaScript Programming...Alvis: a tool for contig and read ALignment VISualisation and chimera detection
By LEGE 201 days agogithub.com - Alvis, a simple command line tool that can generate visualisations for a number of common alignment analysis tasks. Alvis is a fast and portable tool that accepts input in a variety of alignment formats and will output production ready vector...Lifemap
By Jit 2786 days agolifemap-ncbi.univ-lyon1.fr - Lifemap is an interactive tool to explore the WHOLE NCBI TAXONOMY. The concept used in Lifemap is similar to the one used in cartography with tools like Google Maps© or Open Street Maps: exploring is done by zooming and panning. The...Python vs Perl
Started by Rahul Agarwal 4155 days ago Replies (6) Last reply by Jit 2385 days agoWhy bioinformatician still using Perl when Python is easy to code, good in ReXp and faster than perl?
