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Bambus
By Jit 3490 days agowww.cbcb.umd.edu - Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with...Fools guide
By Poonam Mahapatra 3261 days agosfg.stanford.edu - This website and accompaning documents are intended as a tool to help researchers dealing with non-model organisms acquire and process transcriptomic high-throughput sequencing data without having to learn extensive bioinformatics skills. It covers...NGS teaching material
By Jit 3258 days agomarinetics.org - High throughput sequencing (HTS) technologies are being applied to a wide range of important topics in biology. However, the analyses of non-model organisms, for which little previous sequence information is available, pose specific problems. This...Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
By Jit 3020 days agoschatzlab.cshl.edu - Monitoring the progress of DNA molecules through a membrane pore has been postulated as a method for sequencing DNA for several decades. Recently, a nanopore-based sequencing instrument, the Oxford Nanopore MinION, has become available that we used...Installing Bandage on Ubunty !
By Jit 2860 days agoinstructions successfully build Bandage on a fresh installation of Ubuntu 14.04Hapsembler: An Assembler for Highly Polymorphic Genomes
By Jit 2846 days agocompbio.cs.toronto.edu - Hapsembler is a haplotype-specific genome assembly toolkit that is designed for genomes that are rich in SNPs and other types of polymorphism. Hapsembler can be used to assemble reads from a variety of platforms including Illumina and Roche/454....Protocol for De novo Genome Assembly using Illumina Reads
By BioStar 1876 days agoIn this protocol, we address and describe the de novo assembly method for small to medium-sized genomes.
Binding Site Prediction in Protein !
Last updated 2873 days ago by Poonam MahapatraThe interaction between proteins and other molecules is fundamental to all biological functions. In this section we include tools that can assist in prediction of interaction sites on protein surface and tools for predicting the structure of the...NCBI Datasets pages
By BioStar 969 days agoAssembly and Genome record pages now redirect to new NCBI Datasets pages.
