Institution/Company:
University of Calgary
Location:
Calgary, AB
Job Description:
Novel diagnostic platform for detection of Osteoarthritis
I invite applications from highly motivated individuals to join my laboratory as a PhD student...
When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was used to produce the B fragilis assembly by Mick Watson’s group.
Again, running spades.py will show you the...
Job Description: three postdoc positions in computational biology are available at the Center for Genomic Science in Milan (Italy):
- Development of computational methods to investigate the interplay between epigenetic and genetic layers and...
github.com - evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver, eSC also automatically creates statistical summaries of the simulation...
The main objectives of this Practical Course are to strengthen skills
of PhD students and young researchers in the domain of Bioinformatics
and Genome Data Analyses on the use of advanced fundamental algorithms
and their applications in genome...
In graph theory, a string graph is an intersection graph of curves in the plane; each curve is called a "string". String graphs were first proposed by E. W. Myers in a 2005 publication.
mummer4.github.io - MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure at the core of MUMmer to a 48-bit suffix array, and that offers improved speed through parallel processing...
Open source software is software that can be freely used, changed, and shared (in modified or unmodified form) by anyone. Open source software is made by many people, and distributed under licenses that comply with the Open Source Definition.The...
github.com - AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism.
Using AlignGraph
AlignGraph --read1 reads_1.fa --read2 reads_2.fa --contig contigs.fa...